ArticleBMC genomics2021
Comprehensive identification and expression analysis of B-Box genes in cotton.
Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 35 citations in OpenAlex.
- Genome-Wide Identification and Expression Analysis of theInternational journal of molecular sciences · 2025Article
- Identification and Analysis of the Plasma Membrane HPlants (Basel, Switzerland) · 2024Article
- Genome-Wide Identification, Characterization and Expression Patterns of the DBB Transcription Factor Family Genes in Wheat.International journal of molecular sciences · 2024Article
- A truncated B-box zinc finger transcription factor confers drought sensitivity in modern cultivated tomatoes.Nature communications · 2024Article
- Genome-Wide Analysis ofInternational journal of molecular sciences · 2024Article
- TheMolecules (Basel, Switzerland) · 2024Article
- Genome-Wide Identification of B-Box Gene Family and Candidate Light-Related Member Analysis of Tung Tree (International journal of molecular sciences · 2024Article
- Comprehensive Characterization of B-Box Zinc Finger Genes inPlants (Basel, Switzerland) · 2023Article
- Identification of BBX gene family and its function in the regulation of microtuber formation in yam.BMC genomics · 2023Article
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- Multi-layered roles of BBX proteins in plant growth and development.Stress biology · 2023Review
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- Genome-Wide Characterization and Anthocyanin-Related Expression Analysis of theFrontiers in genetics · 2022Article
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Authors and funding
10 authors at 3 institutions in 1 country.
Funding
Abstract
backgroundB-BOX (BBX) proteins are zinc-finger transcription factors with one or two BBX domains and sometimes a CCT domain. These proteins play an essential role in regulating plant growth and development, as well as in resisting abiotic stress. So far, the BBX gene family has been widely studied in other crops. However, no one has systematically studied the BBX gene in cotton.
resultsIn the present study, 17, 18, 37 and 33 BBX genes were detected in Gossypium arboreum, G. raimondii, G. hirsutum and G. barbadense, respectively, via genome-wide identification. Phylogenetic analysis showed that all BBX genes were divided into 5 main categories. The protein motifs and exon/intron structures showed that each group of BBX genes was highly conserved. Collinearity analysis revealed that the amplification of BBX gene family in Gossypium spp. was mainly through segmental replication. Nonsynonymous (Ka)/ synonymous (Ks) substitution ratios indicated that the BBX gene family had undergone purification selection throughout the long-term natural selection process. Moreover, transcriptomic data showed that some GhBBX genes were highly expressed in floral organs. The qRT-PCR results showed that there were significant differences in GhBBX genes in leaves and shoot apexes between early-maturing materials and late-maturing materials at most periods. Yeast two-hybrid results showed that GhBBX5/GhBBX23 and GhBBX8/GhBBX26 might interact with GhFT. Transcriptome data analysis and qRT-PCR verification showed that different GhBBX genes had different biological functions in abiotic stress and phytohormone response.
conclusionsOur comprehensive analysis of BBX in G. hirsutum provided a basis for further study on the molecular role of GhBBXs in regulating flowering and cotton resistance to abiotic stress.
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