Evidence map›Paper›PMID 34118759›Full record

ReviewCurrent opinion in chemical biology2021

Affecting RNA biology genome-wide by binding small molecules and chemically induced proximity.

Jared T Baisden, Jessica L Childs-Disney, Lucas S Ryan, Matthew D Disney

Abstract readReview
In one paragraph

Review in Current opinion in chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Review
  7. PROTACs: past, present and future.Chemical Society reviews · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jared T BaisdenDepartment of Chemistry, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458 USA.
Jessica L Childs-DisneyDepartment of Chemistry, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458 USA.
Lucas S RyanDepartment of Chemistry, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458 USA.
Matthew D DisneyDepartment of Chemistry, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458 USA. Electronic address: disney@scripps.edu.

Funding

Poly (ADP-Ribose) Signalling in Glutamate ExcitotoxicityP01NS039148 · NINDS · JOHNS HOPKINS UNIVERSITY · PI DAWSON, TED M. · 1999 to 2008
$11.5M
Design of Precision Small Molecules Targeting RNA Repeating Transcripts to Manipulate and Study Disease BiologyR35NS116846 · NINDS · UNIVERSITY OF FLORIDA · PI Matthew D Disney · 2020 to 2026
$9.4M
Validation of r(G4C2)exp-binding small molecules in vivo and c9FTD/ALS biomarker developmentP01NS099114 · NINDS · UNIVERSITY OF FLORIDA · PI DISNEY, MATTHEW D · 2017 to 2021
$6.5M
Targeted degradation of RNAs by using small moleculesR01CA249180 · NCI · UNIVERSITY OF FLORIDA · PI Matthew D Disney · 2020 to 2026
$4.8M
RNA Targeted Drug Discovery and Development for Parkinson DiseaseUG3NS116921 · NINDS · RBHS-ROBERT WOOD JOHNSON MEDICAL SCHOOL · PI DISNEY, MATTHEW D, MOURADIAN, M. MARAL · 2020 to 2020
$523k
NCI NIH HHS R01 CA249180NINDS NIH HHS P01 NS039148NINDS NIH HHS P01 NS099114NINDS NIH HHS R35 NS116846NINDS NIH HHS UG3 NS116921
6 · The paper itself

Abstract

The ENCODE and genome-wide association projects have shown that much of the genome is transcribed into RNA and much less is translated into protein. These and other functional studies suggest that the druggable transcriptome is much larger than the druggable proteome. This review highlights approaches to define druggable RNA targets and structure-activity relationships across genomic RNA. Binding compounds can be identified and optimized into structure-specific ligands by using sequence-based design with various modes of action, for example, inhibiting translation or directing pre-mRNA splicing outcomes. In addition, strategies to direct protein activity against an RNA of interest via chemically induced proximity is a burgeoning area that has been validated both in cells and in preclinical animal models, and we describe that it may allow rapid access to new avenues to affect RNA biology. These approaches and the unique modes of action suggest that more RNAs are potentially amenable to targeting than proteins.

Indexed as

AnimalsAntineoplastic AgentsAzo CompoundsBase SequenceDrug DesignGene Expression Regulation, NeoplasticGenomeGenome-Wide Association StudyGenomicsHumansLigandsModels, AnimalPyrimidinesRNASmall Molecule LibrariesStructure-Activity RelationshipAntineoplastic AgentsAzo CompoundsLigandsPyrimidinesRisdiplamRNASmall Molecule LibrariesCancerChemical biologyMicrosatellite disordersRNASmall molecules, Induced proximityTranscriptome-wide design

Identifiers

PMID34118759
PMCPMC9264282

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.