Evidence map›Paper›PMID 34117248›Full record

ArticleNature communications2021

Dynamic self-assembly of compartmentalized DNA nanotubes.

Siddharth Agarwal, Melissa A Klocke, Passa E Pungchai, Elisa Franco

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Membrane-Associated Biomolecules for Synthetic Cell Signalling.Chembiochem : a European journal of chemical biology · 2026
    Review
  2. Article
  3. Light-responsive DNA nanostructures.Nature reviews. Chemistry · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Phase Separation of Nucleic Acids: Mechanisms, Properties, and Applications.Angewandte Chemie (International ed. in English) · 2026
    Review
  9. Review
  10. DNA Origami and Its Applications in Synthetic Biology.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  11. Review
  12. Article
  13. Article
  14. Dynamic Transcription Machineries in Protocells.Journal of the American Chemical Society · 2025
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Siddharth Agarwal *Department of Bioengineering, University of California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0001-9972-3097
Melissa A Klocke *Department of Mechanical Engineering, University of California, Riverside, CA, USA.
Passa E PungchaiDepartment of Bioengineering, University of California, Los Angeles, CA, USA.
Elisa FrancoDepartment of Bioengineering, University of California, Los Angeles, CA, USA. efranco@seas.ucla.edu.ORCID http://orcid.org/0000-0003-1103-2668

Funding

Multiphoton Microscope for Deep Tissue ImagingS10OD025017 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BENTOLILA, LAURENT A. · 2018 to 2018
$599k
NIH HHS S10 OD025017
6 · The paper itself

Abstract

Bottom-up synthetic biology aims to engineer artificial cells capable of responsive behaviors by using a minimal set of molecular components. An important challenge toward this goal is the development of programmable biomaterials that can provide active spatial organization in cell-sized compartments. Here, we demonstrate the dynamic self-assembly of nucleic acid (NA) nanotubes inside water-in-oil droplets. We develop methods to encapsulate and assemble different types of DNA nanotubes from programmable DNA monomers, and demonstrate temporal control of assembly via designed pathways of RNA production and degradation. We examine the dynamic response of encapsulated nanotube assembly and disassembly with the support of statistical analysis of droplet images. Our study provides a toolkit of methods and components to build increasingly complex and functional NA materials to mimic life-like functions in synthetic cells.

Indexed as

Artificial CellsBiocompatible MaterialsDNAEmulsionsLipid DropletsMacromolecular SubstancesModels, MolecularNanotechnologyNanotubesNucleic Acid ConformationOligonucleotidesSynthetic BiologyWaterBiocompatible MaterialsDNAEmulsionsMacromolecular SubstancesOligonucleotidesWater

Identifiers

PMID34117248
PMCPMC8196065

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.