Evidence map›Paper›PMID 34117224›Full record

ArticleNature communications2021

E2F6 initiates stable epigenetic silencing of germline genes during embryonic development.

Thomas Dahlet, Matthias Truss, Ute Frede, Hala Al Adhami, Anaïs F Bardet, Michael Dumas, Judith Vallet, Johana Chicher, Philippe Hammann, Sarah Kottnik and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  11. DNMT1 can induce primary germ layer differentiation through de novo DNA methylation.Genes to cells : devoted to molecular & cellular mechanisms · 2024
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Epigenomes · 2022
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 4 countries.

Thomas Dahlet *University of Strasbourg, Strasbourg, France.ORCID 0000-0001-7481-2456
Matthias Truss *Pediatric Oncology, Labor für Pädiatrische Molekularbiologie, Charité - Universitätsmedizin Berlin, Berlin, Germany. matthias.truss@charite.de.
Ute FredePediatric Oncology, Labor für Pädiatrische Molekularbiologie, Charité - Universitätsmedizin Berlin, Berlin, Germany.
Hala Al AdhamiUniversity of Strasbourg, Strasbourg, France.ORCID 0000-0001-6107-9857
Anaïs F BardetUniversity of Strasbourg, Strasbourg, France.ORCID 0000-0003-2306-7809
Michael DumasUniversity of Strasbourg, Strasbourg, France.
Judith ValletUniversity of Strasbourg, Strasbourg, France.
Johana ChicherPlateforme protéomique Strasbourg Esplanade, CNRS, University of Strasbourg, Strasbourg, France.ORCID 0000-0002-4403-7484
Philippe HammannPlateforme protéomique Strasbourg Esplanade, CNRS, University of Strasbourg, Strasbourg, France.ORCID 0000-0002-6883-9203
Sarah KottnikPediatric Oncology, Labor für Pädiatrische Molekularbiologie, Charité - Universitätsmedizin Berlin, Berlin, Germany.
Peter HansenBerlin Brandenburg Center for Regenerative Therapies (BCRT), Charité Universitätsmedizin Berlin, Berlin, Germany.
Uschi LuzPediatric Oncology, Labor für Pädiatrische Molekularbiologie, Charité - Universitätsmedizin Berlin, Berlin, Germany.
Gonzalo AlvarezPediatric Oncology, Labor für Pädiatrische Molekularbiologie, Charité - Universitätsmedizin Berlin, Berlin, Germany.ORCID 0000-0003-2640-2772
Ghislain AuclairUniversity of Strasbourg, Strasbourg, France.
Jochen HechtBerlin Brandenburg Center for Regenerative Therapies (BCRT), Charité Universitätsmedizin Berlin, Berlin, Germany.
Peter N RobinsonBerlin Brandenburg Center for Regenerative Therapies (BCRT), Charité Universitätsmedizin Berlin, Berlin, Germany.ORCID 0000-0002-0736-9199
Christian HagemeierPediatric Oncology, Labor für Pädiatrische Molekularbiologie, Charité - Universitätsmedizin Berlin, Berlin, Germany. christian.hagemeier@charite.de.ORCID 0000-0003-1653-5731
Michael WeberUniversity of Strasbourg, Strasbourg, France. michael.weber@unistra.fr.ORCID 0000-0003-3484-5821
Centre National de la Recherche Scientifique · FRCharité - Universitätsmedizin Berlin · DEBerlin-Brandenburger Centrum für Regenerative Therapien · DEJackson Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In mouse development, long-term silencing by CpG island DNA methylation is specifically targeted to germline genes; however, the molecular mechanisms of this specificity remain unclear. Here, we demonstrate that the transcription factor E2F6, a member of the polycomb repressive complex 1.6 (PRC1.6), is critical to target and initiate epigenetic silencing at germline genes in early embryogenesis. Genome-wide, E2F6 binds preferentially to CpG islands in embryonic cells. E2F6 cooperates with MGA to silence a subgroup of germline genes in mouse embryonic stem cells and in embryos, a function that critically depends on the E2F6 marked box domain. Inactivation of E2f6 leads to a failure to deposit CpG island DNA methylation at these genes during implantation. Furthermore, E2F6 is required to initiate epigenetic silencing in early embryonic cells but becomes dispensable for the maintenance in differentiated cells. Our findings elucidate the mechanisms of epigenetic targeting of germline genes and provide a paradigm for how transient repression signals by DNA-binding factors in early embryonic cells are translated into long-term epigenetic silencing during mouse development.

Indexed as

Epigenesis, GeneticAnimalsBinding SitesCell DifferentiationCpG IslandsCRISPR-Cas SystemsDNA MethylationE2F6 Transcription FactorEmbryonic DevelopmentGene SilencingGerm CellsMiceMice, KnockoutMouse Embryonic Stem CellsPolycomb Repressive Complex 1RNA, Small InterferingE2F6 protein, humanE2f6 protein, mouseE2F6 Transcription FactorPolycomb Repressive Complex 1RNA, Small Interfering

Identifiers

PMID34117224
PMCPMC8195999
OpenAlexW3171890521

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.