Evidence map›Paper›PMID 34117221›Full record

ArticleNature communications2021

Distinct clinical and immunological profiles of patients with evidence of SARS-CoV-2 infection in sub-Saharan Africa.

Ben Morton, Kayla G Barnes, Catherine Anscombe, Khuzwayo Jere, Prisca Matambo, Jonathan Mandolo, Raphael Kamng'ona, Comfort Brown, James Nyirenda, Tamara Phiri and 16 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Circulation of SARS-CoV-2 and Co-Infection withInfectious disease reports · 2025
    Article
  4. Rethinking the evidence on COVID-19 in Africa.The Lancet. Infectious diseases · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Observational
  10. Article
  11. Article
  12. Article
  13. Article
  14. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Africa: Current Considerations and Future Projections.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Severe COVID-19 in Uganda across Two Epidemic Phases: A Prospective Cohort Study.The American journal of tropical medicine and hygiene · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 5 institutions in 3 countries.

Ben Morton *Malawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi. ben.morton@lstmed.ac.uk.ORCID 0000-0002-6164-2854
Kayla G Barnes *Malawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.ORCID 0000-0002-8291-4388
Catherine AnscombeMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
Khuzwayo JereMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.ORCID 0000-0003-3376-8529
Prisca MatamboMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
Jonathan MandoloMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
Raphael Kamng'onaMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
Comfort BrownMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
James NyirendaMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
Tamara PhiriDepartment of Medicine, Queen Elizabeth Central Hospital, Blantyre, Malawi.ORCID 0000-0002-8758-4648
Ndaziona P BandaUniversity of Malawi-College of Medicine, Blantyre, Malawi.
Charlotte Van Der VeerMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
Kwazizira S MndoloDepartment of Medicine, Queen Elizabeth Central Hospital, Blantyre, Malawi.
Kelvin MpondaDepartment of Medicine, Queen Elizabeth Central Hospital, Blantyre, Malawi.
Jamie RylanceMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.ORCID 0000-0002-2323-3611
Chimota PhiriDepartment of Medicine, Queen Elizabeth Central Hospital, Blantyre, Malawi.
Jane MallewaUniversity of Malawi-College of Medicine, Blantyre, Malawi.
Mulinda NyirendaUniversity of Malawi-College of Medicine, Blantyre, Malawi.ORCID 0000-0003-2037-7449
Grace KathaDepartment of Medicine, Queen Elizabeth Central Hospital, Blantyre, Malawi.
Paul KambiyaMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
James JafaliMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
Henry C MwandumbaMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.ORCID 0000-0003-4470-3608
Stephen B GordonMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
Blantyre COVID-19 Consortium
Jennifer Cornick *Malawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
Kondwani C Jambo *Malawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi. Kondwani.Jambo@lstmed.ac.uk.ORCID 0000-0002-3195-2210
University of Liverpool · GBQueen Elizabeth Central Hospital · MWUniversity of Malawi · MWBroad Institute · USLiverpool School of Tropical Medicine · GB

Funding

Identifying genetic determinants of Rotavirus Vaccine Failure in Malawian ChildrenK01TW010853 · FIC · HARVARD SCHOOL OF PUBLIC HEALTH · PI BARNES, KAYLA G · 2018 to 2022
$731k
Department of Health 16/136/46FIC NIH HHS K01 TW010853Medical Research Council MR/P020526/1Medical Research Council MR/T008822/1Wellcome TrustWellcome Trust 201945/Z/16/ZWellcome Trust 206545/Z/17/ZWellcome Trust 211098/Z/18/ZWellcome Trust 211433/Z/18/ZWellcome Trust 220757/Z/20/Z
6 · The paper itself

Abstract

Although the COVID-19 pandemic has left no country untouched there has been limited research to understand clinical and immunological responses in African populations. Here we characterise patients hospitalised with suspected (PCR-negative/IgG-positive) or confirmed (PCR-positive) COVID-19, and healthy community controls (PCR-negative/IgG-negative). PCR-positive COVID-19 participants were more likely to receive dexamethasone and a beta-lactam antibiotic, and survive to hospital discharge than PCR-negative/IgG-positive and PCR-negative/IgG-negative participants. PCR-negative/IgG-positive participants exhibited a nasal and systemic cytokine signature analogous to PCR-positive COVID-19 participants, predominated by chemokines and neutrophils and distinct from PCR-negative/IgG-negative participants. PCR-negative/IgG-positive participants had increased propensity for Staphylococcus aureus and Streptococcus pneumoniae colonisation. PCR-negative/IgG-positive individuals with high COVID-19 clinical suspicion had inflammatory profiles analogous to PCR-confirmed disease and potentially represent a target population for COVID-19 treatment strategies.

Indexed as

AdultAfrica South of the SaharaAnti-Bacterial AgentsAntibodiesCoinfectionCOVID-19COVID-19 Drug TreatmentCytokinesDexamethasoneFemaleHumansImmunoglobulin GImmunoglobulin MMaleMiddle AgedPandemicsAnti-Bacterial AgentsAntibodiesCytokinesDexamethasoneImmunoglobulin GImmunoglobulin M

Identifiers

PMID34117221
PMCPMC8196064
OpenAlexW3171935735

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.