Evidence map›Paper›PMID 34116029›Full record

ArticleGastroenterology2021

A Pilot Study on Automatic Three-Dimensional Quantification of Barrett's Esophagus for Risk Stratification and Therapy Monitoring.

Sharib Ali, Adam Bailey, Stephen Ash, Maryam Haghighat, TGU Investigators, Simon J Leedham, Xin Lu, James E East, Jens Rittscher, Barbara Braden

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In one paragraph

Article in Gastroenterology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Sharib AliInstitute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, United Kingdom; Oxford National Institute for Health Research Biomedical Research Centre, Oxford, United Kingdom; Big Data Institute, University of Oxford, Li Ka Shing Centre for Health Information and Discovery, Oxford, United Kingdom. Electronic address: sharib.ali@eng.ox.ac.uk.
Adam BaileyTranslational Gastroenterology Unit, Experimental Medicine Division, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford, United Kingdom; Oxford National Institute for Health Research Biomedical Research Centre, Oxford, United Kingdom.
Stephen AshLudwig Institute for Cancer Research, University of Oxford, Oxford, United Kingdom.
Maryam HaghighatInstitute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, United Kingdom; Big Data Institute, University of Oxford, Li Ka Shing Centre for Health Information and Discovery, Oxford, United Kingdom.
TGU InvestigatorsTranslational Gastroenterology Unit, Experimental Medicine Division, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford, United Kingdom.
Simon J LeedhamOxford National Institute for Health Research Biomedical Research Centre, Oxford, United Kingdom; Intestinal Stem Cell Biology Laboratory, Wellcome Trust Centre Human Genetics, University of Oxford, Oxford, United Kingdom.
Xin LuOxford National Institute for Health Research Biomedical Research Centre, Oxford, United Kingdom; Ludwig Institute for Cancer Research, University of Oxford, Oxford, United Kingdom.
James E EastTranslational Gastroenterology Unit, Experimental Medicine Division, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford, United Kingdom; Oxford National Institute for Health Research Biomedical Research Centre, Oxford, United Kingdom.
Jens RittscherInstitute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, United Kingdom; Oxford National Institute for Health Research Biomedical Research Centre, Oxford, United Kingdom; Ludwig Institute for Cancer Research, University of Oxford, Oxford, United Kingdom; Big Data Institute, University of Oxford, Li Ka Shing Centre for Health Information and Discovery, Oxford, United Kingdom. Electronic address: jens.rittscher@eng.ox.ac.uk.
Barbara BradenTranslational Gastroenterology Unit, Experimental Medicine Division, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford, United Kingdom; Oxford National Institute for Health Research Biomedical Research Centre, Oxford, United Kingdom. Electronic address: barbara.braden@ndm.ox.ac.uk.

Funding

Cancer Research UK 29021Department of HealthMedical Research Council MC_PC_MR/S025952/1Medical Research Council MC_UU_00008/7Medical Research Council MC_UU_12010/7Medical Research Council MR/S036377/1Wellcome Trust 109965/Z/15/ZWellcome Trust 206314Wellcome Trust 206314/Z/17/Z
6 · The paper itself

Abstract

BACKGROUND &

aimsBarrett's epithelium measurement using widely accepted Prague C&M classification is highly operator dependent. We propose a novel methodology for measuring this risk score automatically. The method also enables quantification of the area of Barrett's epithelium (BEA) and islands, which was not possible before. Furthermore, it allows 3-dimensional (3D) reconstruction of the esophageal surface, enabling interactive 3D visualization. We aimed to assess the accuracy of the proposed artificial intelligence system on both phantom and endoscopic patient data.

methodsUsing advanced deep learning, a depth estimator network is used to predict endoscope camera distance from the gastric folds. By segmenting BEA and gastroesophageal junction and projecting them to the estimated mm distances, we measure C&M scores including the BEA. The derived endoscopy artificial intelligence system was tested on a purpose-built 3D printed esophagus phantom with varying BEAs and on 194 high-definition videos from 131 patients with C&M values scored by expert endoscopists.

resultsEndoscopic phantom video data demonstrated a 97.2% accuracy with a marginal ± 0.9 mm average deviation for C&M and island measurements, while for BEA we achieved 98.4% accuracy with only ±0.4 cm

conclusionsThe proposed methodology automatically extracts Prague C&M scores with high accuracy. Quantification and 3D reconstruction of the entire Barrett's area provides new opportunities for risk stratification and assessment of therapy response.

Indexed as

Deep LearningEsophagoscopyImage Interpretation, Computer-AssistedImaging, Three-DimensionalAgedAutomationBarrett EsophagusDisease ProgressionEsophageal MucosaEsophagogastric JunctionFemaleHumansMalePilot ProjectsPredictive Value of TestsReproducibility of ResultsDeep learningEsophageal cancerImagingRisk assessmentThree-dimensional

Identifiers

PMID34116029
PMCPMC7617121

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.