Evidence map›Paper›PMID 34115202›Full record

ArticleJournal of molecular modeling2021

Effect of the acyl-group length on the chemoselectivity of the lipase-catalyzed acylation of propranolol-a computational study.

Markus Doerr, Alexander Romero, Martha C Daza

Abstract read
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In one paragraph

Article in Journal of molecular modeling, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Markus DoerrGrupo de Bioquímica Teórica, Universidad Industrial de Santander, Cra. 27 Calle 9, Bucaramanga, Colombia. mhodoerr@uis.edu.co.ORCID http://orcid.org/0000-0003-1001-2972
Alexander RomeroGrupo de Bioquímica Teórica, Universidad Industrial de Santander, Cra. 27 Calle 9, Bucaramanga, Colombia.
Martha C DazaGrupo de Bioquímica Teórica, Universidad Industrial de Santander, Cra. 27 Calle 9, Bucaramanga, Colombia.ORCID https://orcid.org/0000-0001-6464-7469
Industrial University of Santander · CO

Funding

Departamento Administrativo de Ciencia, Tecnología e Innovación 110271250586Universidad Industrial de Santander 8855
6 · The paper itself

Abstract

The selective N-acylation of 1,2-amino alcohols has been proposed to occur through the proton shuttle mechanism. However, the O-acetylation of propranolol catalyzed by Candida antarctica lipase B is an exception. We investigated the relation between the chemoselectivity of this reaction and the acyl group length. For this purpose, we compared the acyl groups: ethanoyl, butanoyl, octanoyl, and hexadecanoyl. We studied the Michaelis complexes between serine-acylated Candida antarctica lipase B and propranolol, employing a computational approach that involved sampling Michaelis complex conformations through ensemble docking plus consensus scoring and molecular dynamics simulations. The conformations were then classified as near attack conformations for acylation of the amino or hydroxy group. The relative populations of these two classes of conformations were found to be consistent with the experimentally observed chemoselective O-acetylation. We predict that increasing the length of the hydrocarbon chain of the acyl group will cause O-acylation to be unfavorable with respect to N-acylation. The nucleophilic attack of propranolol to the acylated lipase was found to be more favorable through the classical mechanism when compared with the proton shuttle mechanism.

Indexed as

Models, MolecularAcylationBasidiomycotaComputational BiologyFungal ProteinsKineticsLipaseMolecular Dynamics SimulationPropranololProtein ConformationSubstrate SpecificityFungal ProteinsLipaselipase B, Candida antarcticaPropranololAmidationAmino alcoholsEnzyme catalysisEsterificationMolecular modelingNear attack conformations

Identifiers

PMID34115202
OpenAlexW3166752286

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.