Evidence map›Paper›PMID 34113054›Full record

ArticleJournal of the American Statistical Association2020

A Bayesian Latent Class Model to Predict Kidney Obstruction in the Absence of Gold Standard.

Changgee Chang, Jeong Hoon Jang, Amita Manatunga, Andrew T Taylor, Qi Long

Abstract read
In one paragraph

Article in Journal of the American Statistical Association, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Changgee ChangDepartment of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania.
Jeong Hoon JangDepartment of Biostatistics and Bioinformatics, Emory University.
Amita ManatungaDepartment of Biostatistics and Bioinformatics, Emory University.
Andrew T TaylorDepartment of Radiology and Imaging Sciences, Emory University.
Qi LongDepartment of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania.

Funding

Privacy-preserving methods and tools for handling missing data in distributed health data networksR01GM124111 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI LONG, QI · 2017 to 2020
$2.3M
Development and Assessment of Decision Supporting System for Renal studiesR01DK108070 · NIDDK · EMORY UNIVERSITY · PI MANATUNGA, AMITA K. · 2016 to 2020
$1.7M
NIDDK NIH HHS R01 DK108070NIGMS NIH HHS R01 GM124111
6 · The paper itself

Abstract

Kidney obstruction, if untreated in a timely manner, can lead to irreversible loss of renal function. A widely used technology for evaluations of kidneys with suspected obstruction is diuresis renography. However, it is generally very challenging for radiologists who typically interpret renography data in practice to build high level of competency due to the low volume of renography studies and insufficient training. Another challenge is that there is currently no gold standard for detection of kidney obstruction. Seeking to develop a computer-aided diagnostic (CAD) tool that can assist practicing radiologists to reduce errors in the interpretation of kidney obstruction, a recent study collected data from diuresis renography, interpretations on the renography data from highly experienced nuclear medicine experts as well as clinical data. To achieve the objective, we develop a statistical model that can be used as a CAD tool for assisting radiologists in kidney interpretation. We use a Bayesian latent class modeling approach for predicting kidney obstruction through the integrative analysis of time-series renogram data, expert ratings, and clinical variables. A nonparametric Bayesian latent factor regression approach is adopted for modeling renogram curves in which the coefficients of the basis functions are parameterized via the factor loadings dependent on the latent disease status and the extended latent factors that can also adjust for clinical variables. A hierarchical probit model is used for expert ratings, allowing for training with rating data from multiple experts while predicting with at most one expert, which makes the proposed model operable in practice. An efficient MCMC algorithm is developed to train the model and predict kidney obstruction with associated uncertainty. We demonstrate the superiority of the proposed method over several existing methods through extensive simulations. Analysis of the renal study also lends support to the usefulness of our model as a CAD tool to assist less experienced radiologists in the field.

Indexed as

Bayesian predictionFactor analysisGibbs samplingHierarchical probit modelJoint modelingKidney obstructionLatent class model

Identifiers

PMID34113054
PMCPMC8188835

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.