Evidence map›Paper›PMID 34112865›Full record

ArticleScientific reports2021

Characterization of metapopulation of Ellobium chinense through Pleistocene expansions and four covariate COI guanine-hotspots linked to G-quadruplex conformation.

Cho Rong Shin, Eun Hwa Choi, Gyeongmin Kim, Su Youn Baek, Bia Park, Jihye Hwang, Jumin Jun, Hyun Jong Kil, Hyunkyung Oh, Kyungjin Lee and 8 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Cho Rong Shin *Department of Biology Education, Teachers College and Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu, 41566, South Korea.
Eun Hwa Choi *Department of Biology Education, Teachers College and Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu, 41566, South Korea.
Gyeongmin Kim *Department of Biology Education, Teachers College and Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu, 41566, South Korea.
Su Youn BaekDepartment of Biology Education, Teachers College and Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu, 41566, South Korea.
Bia ParkDepartment of Biology Education, Teachers College and Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu, 41566, South Korea.
Jihye HwangDepartment of Biology Education, Teachers College and Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu, 41566, South Korea.
Jumin JunBiological and Genetic Resources Utilization Division, National Institute of Biological Resources, Incheon, 22689, South Korea.
Hyun Jong KilBiological and Genetic Resources Utilization Division, National Institute of Biological Resources, Incheon, 22689, South Korea.
Hyunkyung OhBiological and Genetic Resources Utilization Division, National Institute of Biological Resources, Incheon, 22689, South Korea.
Kyungjin LeeBiological and Genetic Resources Utilization Division, National Institute of Biological Resources, Incheon, 22689, South Korea.
Sa Heung KimInstitute of the Sea Life Diversity, In the Sea, Incheon, 63573, South Korea.
Jongrak LeeInstitute of the Sea Life Diversity, In the Sea, Incheon, 63573, South Korea.
Seung Jik SuhByunsanbando National Park Office, Korea National Park Service, Buan-gun, Jeonrabuk-do, 56342, South Korea.
Dong-Min ParkByunsanbando National Park Office, Korea National Park Service, Buan-gun, Jeonrabuk-do, 56342, South Korea.
Ho Young SukDepartment of Life Sciences, Yeungnam University, Gyungsan, Gyeongsangbuk-do, 38541, South Korea.
Yong Seok LeeDepartment of Life Science and Biotechnology, College of Natural Sciences, Soonchunhyang University, Asan, Chungcheongnam-do, 31538, South Korea.
Young Sup LeeSchool of Life Science, Graduate School, Kyungpook National University, Daegu, 41566, South Korea.
Ui Wook HwangDepartment of Biology Education, Teachers College and Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu, 41566, South Korea. uwhwang1@gmail.com.
Kyungpook National University · KRNational Institute of Biological Resources · KRSoonchunhyang University · KRYeungnam University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The land snail Ellobium chinense (L. Pfeiffer, 1855) (Eupulmonata, Ellobiida, Ellobiidae), which inhabits the salt marshes along the coastal areas of northwestern Pacific, is an endangered species on the IUCN Red List. Over recent decades, the population size of E. chinense has consistently decreased due to environmental interference caused by natural disasters and human activities. Here, we provide the first assessment of the genetic diversity and population genetic structures of northwestern Pacific E. chinense. The results analyzed with COI and microsatellites revealed that E. chinense population exhibit metapopulation characteristics, retaining under the influence of the Kuroshio warm currents through expansion of the Late-Middle and Late Pleistocene. We also found four phylogenetic groups, regardless of geographical distributions, which were easily distinguishable by four unidirectional and stepwise adenine-to-guanine transitions in COI (sites 207-282-354-420: A-A-A-A, A-A-G-A, G-A-G-A, and G-G-G-G). Additionally, the four COI hotspots were robustly connected with a high degree of covariance between them. We discuss the role of these covariate guanines which link to form four consecutive G-quadruplexes, and their possible beneficial effects under positive selection pressure.

Indexed as

G-QuadruplexesGuanineAnimalsElectron Transport Complex IVGastropodaGenetics, PopulationGenetic VariationHumansMicrosatellite RepeatsPhylogenyPhylogeographyElectron Transport Complex IVGuanine

Identifiers

PMID34112865
PMCPMC8192772
OpenAlexW3167315871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.