Evidence map›Paper›PMID 34112784›Full record

ArticleNature communications2021

The epigenetic regulator LSH maintains fork protection and genomic stability via MacroH2A deposition and RAD51 filament formation.

Xiaoping Xu, Kai Ni, Yafeng He, Jianke Ren, Chongkui Sun, Yie Liu, Mirit I Aladjem, Sandra Burkett, Richard Finney, Xia Ding and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 38 citations in OpenAlex.

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  20. Histone H2A variants: Diversifying chromatin to ensure genome integrity.Seminars in cell & developmental biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Xiaoping XuEpigenetics Section, Mouse Cancer Genetics Program, National Cancer Institute, Frederick, MD, USA.
Kai NiEpigenetics Section, Mouse Cancer Genetics Program, National Cancer Institute, Frederick, MD, USA.
Yafeng HeEpigenetics Section, Mouse Cancer Genetics Program, National Cancer Institute, Frederick, MD, USA.
Jianke RenEpigenetics Section, Mouse Cancer Genetics Program, National Cancer Institute, Frederick, MD, USA.
Chongkui SunLaboratory of Molecular Gerontology, National Institute on Aging, NIH, Baltimore, MD, USA.
Yie LiuLaboratory of Molecular Gerontology, National Institute on Aging, NIH, Baltimore, MD, USA.
Mirit I AladjemDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-1875-3110
Sandra BurkettMolecular Cytogenetics Core Facility, MCGP, CCR, National Cancer Institute, NIH, Frederick, MD, USA.ORCID 0000-0002-5476-4028
Richard FinneyCCR Collaborative Bioinformatics Resource, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Xia DingGenetics of Cancer Susceptibility Section, Mouse Cancer Genetics Program, National Cancer Institute, Frederick, MD, USA.
Shyam K SharanGenetics of Cancer Susceptibility Section, Mouse Cancer Genetics Program, National Cancer Institute, Frederick, MD, USA.ORCID 0000-0002-9333-870X
Kathrin MueggeEpigenetics Section, Mouse Cancer Genetics Program, National Cancer Institute, Frederick, MD, USA. Kathrin.Muegge@nih.gov.ORCID 0000-0003-1396-4282
National Cancer Institute · USNational Institute on Aging · USLeidos (United States) · USNational Institutes of Health · USPfizer (United States) · US

Funding

Initiation of DNA Replication in Mammalian CellsZIABC010411 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ALADJEM, MIRIT · 2009 to 2025
$25.0M
Epigenetic control during embryogenesisZIABC010014 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MUEGGE, KATHRIN · 2009 to 2025
$18.1M
Identification of genetic interactors of BRCA2ZIABC011311 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHARAN, SHYAM · 2010 to 2025
$13.2M
Validation of, and therapeutic evaluation in ovarian cancer GEM modelsZIABC011737 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHARAN, SHYAM · 2016 to 2025
$11.9M
6 · The paper itself

Abstract

The Immunodeficiency Centromeric Instability Facial Anomalies (ICF) 4 syndrome is caused by mutations in LSH/HELLS, a chromatin remodeler promoting incorporation of histone variant macroH2A. Here, we demonstrate that LSH depletion results in degradation of nascent DNA at stalled replication forks and the generation of genomic instability. The protection of stalled forks is mediated by macroH2A, whose knockdown mimics LSH depletion and whose overexpression rescues nascent DNA degradation. LSH or macroH2A deficiency leads to an impairment of RAD51 loading, a factor that prevents MRE11 and EXO1 mediated nascent DNA degradation. The defect in RAD51 loading is linked to a disbalance of BRCA1 and 53BP1 accumulation at stalled forks. This is associated with perturbed histone modifications, including abnormal H4K20 methylation that is critical for BRCA1 enrichment and 53BP1 exclusion. Altogether, our results illuminate the mechanism underlying a human syndrome and reveal a critical role of LSH mediated chromatin remodeling in genomic stability.

Indexed as

DNA ReplicationGenomic InstabilityAnimalsBRCA1 ProteinCell Line, TumorCell SurvivalChromatin Assembly and DisassemblyChromatin Immunoprecipitation SequencingDNA HelicasesDNA Repair EnzymesEpigenesis, GeneticExodeoxyribonucleasesHistonesHumansMethylationMiceBRCA1 ProteinBRCA1 protein, humanDNA HelicasesDNA Repair EnzymesEXO1 protein, humanExodeoxyribonucleasesHELLS protein, humanHistonesmacroH2A histoneMRE11 Homologue ProteinMRE11 protein, humanRAD51 protein, humanRad51 RecombinaseRNA, Small Interfering

Identifiers

PMID34112784
PMCPMC8192551
OpenAlexW3169857137

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.