Evidence map›Paper›PMID 34112737›Full record

ArticleJournal for immunotherapy of cancer2021

Protein citrullination as a source of cancer neoantigens.

Hiroyuki Katayama, Makoto Kobayashi, Ehsan Irajizad, Alejandro Sevillarno, Nikul Patel, Xiangying Mao, Leona Rusling, Jody Vykoukal, Yining Cai, Fuchung Hsiao and 6 more

Open access · goldAbstract read
In one paragraph

Article in Journal for immunotherapy of cancer, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 43 citations in OpenAlex.

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  19. Protein citrullination: inhibition, identification and insertion.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  20. Inhibiting MEK1 R189 citrullination enhances the chemosensitivity of docetaxel to multiple tumour cells.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Hiroyuki KatayamaClinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0003-3117-1390
Makoto KobayashiBasic Pathology, Fukushima Medical University, Fukushima, Japan.
Ehsan IrajizadBiostatistics, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Alejandro SevillarnoClinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0002-2107-2375
Nikul PatelClinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Xiangying MaoClinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Leona RuslingClinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Jody VykoukalClinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Yining CaiClinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Fuchung HsiaoClinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Chuan-Yih YuClinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
James LongBiostatistics, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Jinsong LiuPathology/Laboratory Medicine, The University of Texas, MD Anderson Cancer Center, Houston, TX, USA.
Franscisco EstevaClinical Development, Cellectis, New York, New York, USA.
Johannes FahrmannClinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Sam HanashClinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA shanash@mdanderson.org.ORCID 0000-0002-4210-1593
The University of Texas MD Anderson Cancer Center · USCellectis (United States) · USFukushima Medical University · JP

Funding

Immune diagnostics and vaccine targets: breast cancer antigens from mice to womenU01CA141539 · NCI · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2009 to 2013
$3.7M
NCI NIH HHS U01 CA141539
6 · The paper itself

Abstract

backgroundCitrulline post-translational modification of proteins is mediated by protein arginine deiminase (PADI) family members and has been associated with autoimmune diseases. The role of PADI-citrullinome in immune response in cancer has not been evaluated. We hypothesized that PADI-mediated citrullinome is a source of neoantigens in cancer that induces immune response.

methodsProtein expression of PADI family members was evaluated in 196 cancer cell lines by means of indepth proteomic profiling. Gene expression was assessed using messenger RNA data sets from The Cancer Genome Atlas. Immunohistochemical analysis of PADI2 and peptidyl-citrulline was performed using breast cancer tissue sections. Citrullinated 12-34-mer peptides in the putative Major Histocompatibility Complex-II (MHC-II) binding range were profiled in breast cancer cell lines to investigate the relationship between protein citrullination and antigen presentation. We further evaluated immunoglobulin-bound citrullinome by mass spectrometry using 156 patients with breast cancer and 113 cancer-free controls.

resultsProteomic and gene expression analyses revealed PADI2 to be highly expressed in several cancer types including breast cancer. Immunohistochemical analysis of 422 breast tumor tissues revealed increased expression of PADI2 in ER- tumors (p<0.0001); PADI2 protein expression was positively correlated (p<0.0001) with peptidyl-citrulline staining. PADI2 expression exhibited strong positive correlations with a B cell immune signature and with MHC-II-bound citrullinated peptides. Increased circulating citrullinated antigen-antibody complexes occurred among newly diagnosed breast cancer cases relative to controls (p=0.0012).

conclusionsAn immune response associated with citrullinome is a rich source of neoantigens in breast cancer with a potential for diagnostic and therapeutic applications.

Indexed as

CitrullinationFemaleHumansImmunotherapyMaleMiddle AgedNeoplasmsProteinsProteomicsProteinsantigensautoimmunitybiomarkershumoralimmunitytumor

Identifiers

PMID34112737
PMCPMC8194337
OpenAlexW3172252418

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.