Evidence map›Paper›PMID 34111137›Full record

ArticlePLoS genetics2021

Disrupting hierarchical control of nitrogen fixation enables carbon-dependent regulation of ammonia excretion in soil diazotrophs.

Marcelo Bueno Batista, Paul Brett, Corinne Appia-Ayme, Yi-Ping Wang, Ray Dixon

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Sentinel plants enable quantitative monitoring of bioavailable nitrate in soils and microbial environments.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Microbiology (Reading, England) · 2026
    Article
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  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
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  14. Review
  15. Article
  16. Article
  17. Article
  18. Engineered plant control of associative nitrogen fixation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Genetic Determinants of Ammonium Excretion inApplied and environmental microbiology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Marcelo Bueno BatistaDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0002-6642-6624
Paul BrettDepartment of Metabolic Biology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0002-9951-5252
Corinne Appia-AymeDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0002-8315-0789
Yi-Ping WangState Key Laboratory of Protein and Plant Gene Research, School of Life Sciences & School of Advanced Agricultural Sciences, Peking University, Beijing, China.
Ray DixonDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0002-6348-639X
John Innes Centre · GBPeking University · CN

Funding

Biotechnology and Biological Sciences Research Council BB/N003608/1Biotechnology and Biological Sciences Research Council BB/N013476/1
6 · The paper itself

Abstract

The energetic requirements for biological nitrogen fixation necessitate stringent regulation of this process in response to diverse environmental constraints. To ensure that the nitrogen fixation machinery is expressed only under appropriate physiological conditions, the dedicated NifL-NifA regulatory system, prevalent in Proteobacteria, plays a crucial role in integrating signals of the oxygen, carbon and nitrogen status to control transcription of nitrogen fixation (nif) genes. Greater understanding of the intricate molecular mechanisms driving transcriptional control of nif genes may provide a blueprint for engineering diazotrophs that associate with cereals. In this study, we investigated the properties of a single amino acid substitution in NifA, (NifA-E356K) which disrupts the hierarchy of nif regulation in response to carbon and nitrogen status in Azotobacter vinelandii. The NifA-E356K substitution enabled overexpression of nitrogenase in the presence of excess fixed nitrogen and release of ammonia outside the cell. However, both of these properties were conditional upon the nature of the carbon source. Our studies reveal that the uncoupling of nitrogen fixation from its assimilation is likely to result from feedback regulation of glutamine synthetase, allowing surplus fixed nitrogen to be excreted. Reciprocal substitutions in NifA from other Proteobacteria yielded similar properties to the A. vinelandii counterpart, suggesting that this variant protein may facilitate engineering of carbon source-dependent ammonia excretion amongst diverse members of this family.

Indexed as

Amino Acid SubstitutionAmmoniaAzotobacter vinelandiiBacterial ProteinsCarbonGene Expression Regulation, BacterialGenetic Complementation TestGlutamate-Ammonia LigaseMutationNitrogenNitrogenaseNitrogen FixationOxygenSoilSoil MicrobiologyTranscription FactorsAmmoniaBacterial ProteinsCarbonGlutamate-Ammonia LigaseNifA protein, BacteriaNitrogenNitrogenaseOxygenSoilTranscription Factors

Identifiers

PMID34111137
PMCPMC8219145
OpenAlexW3168207761

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.