Evidence map›Paper›PMID 34111132›Full record

ArticlePloS one2021

Selective transport of fluorescent proteins into the phage nucleus.

Katrina T Nguyen, Joseph Sugie, Kanika Khanna, MacKennon E Egan, Erica A Birkholz, Jina Lee, Christopher Beierschmitt, Elizabeth Villa, Joe Pogliano

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 27 citations in OpenAlex.

  1. The biology of jumbo phages.Nature communications · 2026
    Review
  2. Article
  3. Review
  4. Article
  5. The Biology of Nucleus-Forming Jumbo Phages.Annual review of genetics · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. A transcriptionally active lipid vesicle encloses the injectedbioRxiv : the preprint server for biology · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Asesino: a nucleus-forming phage that lacks PhuZ.bioRxiv : the preprint server for biology · 2024
    Article
  15. An essential and highly selective protein import pathway encoded by nucleus-forming phage.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Identification of the bacteriophage nucleus protein interaction network.bioRxiv : the preprint server for biology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Katrina T NguyenDivision of Biological Sciences, University of California San Diego, La Jolla, CA, United States of America.
Joseph SugieDivision of Biological Sciences, University of California San Diego, La Jolla, CA, United States of America.ORCID 0000-0003-2911-1807
Kanika KhannaDivision of Biological Sciences, University of California San Diego, La Jolla, CA, United States of America.ORCID 0000-0001-7150-0350
MacKennon E EganDivision of Biological Sciences, University of California San Diego, La Jolla, CA, United States of America.
Erica A BirkholzDivision of Biological Sciences, University of California San Diego, La Jolla, CA, United States of America.
Jina LeeDivision of Biological Sciences, University of California San Diego, La Jolla, CA, United States of America.
Christopher BeierschmittDivision of Biological Sciences, University of California San Diego, La Jolla, CA, United States of America.ORCID 0000-0003-0151-1091
Elizabeth VillaDivision of Biological Sciences, University of California San Diego, La Jolla, CA, United States of America.ORCID 0000-0003-4677-9809
Joe PoglianoDivision of Biological Sciences, University of California San Diego, La Jolla, CA, United States of America.ORCID 0000-0001-8989-2655
University of California San Diego · US

Funding

Molecular and cellular biology of the phage nucleus and spindleR01GM129245 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI POGLIANO, JOSEPH A · 2018 to 2025
$4.2M
Characterization of a bacteriophage tubulin involved in viral replicationR01GM104556 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AGARD, DAVID A., POGLIANO, JOSEPH A · 2013 to 2016
$1.6M
NIGMS NIH HHS R01 GM104556NIGMS NIH HHS R01 GM129245
6 · The paper itself

Abstract

Upon infection of Pseudomonas cells, jumbo phages 201Φ2-1, ΦPA3, and ΦKZ assemble a phage nucleus. Viral DNA is enclosed within the phage-encoded proteinaceous shell along with proteins associated with DNA replication, recombination and transcription. Ribosomes and proteins involved in metabolic processes are excluded from the nucleus. RNA synthesis occurs inside the phage nucleus and messenger RNA is presumably transported into the cytoplasm to be translated. Newly synthesized proteins either remain in the cytoplasm or specifically translocate into the nucleus. The molecular mechanisms governing selective protein sorting and nuclear import in these phage infection systems are currently unclear. To gain insight into this process, we studied the localization of five reporter fluorescent proteins (GFP+, sfGFP, GFPmut1, mCherry, CFP). During infection with ΦPA3 or 201Φ2-1, all five fluorescent proteins were excluded from the nucleus as expected; however, we have discovered an anomaly with the ΦKZ nuclear transport system. The fluorescent protein GFPmut1, expressed by itself, was transported into the ΦKZ phage nucleus. We identified the amino acid residues on the surface of GFPmut1 required for nuclear targeting. Fusing GFPmut1 to any protein, including proteins that normally reside in the cytoplasm, resulted in transport of the fusion into the nucleus. Although the mechanism of transport is still unknown, we demonstrate that GFPmut1 is a useful tool that can be used for fluorescent labelling and targeting of proteins into the ΦKZ phage nucleus.

Indexed as

Cell NucleusLuminescent ProteinsActive Transport, Cell NucleusBacteriophagesGreen Fluorescent ProteinsProtein TransportViral ProteinsGreen Fluorescent ProteinsLuminescent ProteinsViral Proteins

Identifiers

PMID34111132
PMCPMC8191949
OpenAlexW3172668757

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.