Evidence map›Paper›PMID 34111131›Full record

ArticlePloS one2021

Automatic algorithm for quantifying lung involvement in patients with chronic obstructive pulmonary disease, infection with SARS-CoV-2, paracoccidioidomycosis and no lung disease patients.

Allan Felipe Fattori Alves, José Ricardo Arruda Miranda, Fabiano Reis, Abner Alves Oliveira, Sérgio Augusto Santana Souza, Carlos Magno Castelo Branco Fortaleza, Suzana Erico Tanni, José Thiago Souza Castro, Diana Rodrigues Pina

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 11 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Allan Felipe Fattori AlvesBotucatu Medical School, Clinics Hospital, Medical Physics and Radioprotection Nucleus, Botucatu, SP, Brazil.
José Ricardo Arruda MirandaInstitute of Bioscience, Sao Paulo State University Julio de Mesquita Filho, Botucatu, SP, Brazil.
Fabiano ReisRadiology and Medical Imaging, State University of Campinas, Campinas, SP, Brazil.
Abner Alves OliveiraInstitute of Bioscience, Sao Paulo State University Julio de Mesquita Filho, Botucatu, SP, Brazil.
Sérgio Augusto Santana SouzaInstitute of Bioscience, Sao Paulo State University Julio de Mesquita Filho, Botucatu, SP, Brazil.
Carlos Magno Castelo Branco FortalezaMedical School, Sao Paulo State University Julio de Mesquita Filho, Botucatu, SP, Brazil.
Suzana Erico TanniMedical School, Sao Paulo State University Julio de Mesquita Filho, Botucatu, SP, Brazil.
José Thiago Souza CastroRadiology and Medical Imaging, State University of Campinas, Campinas, SP, Brazil.
Diana Rodrigues PinaMedical School, Sao Paulo State University Julio de Mesquita Filho, Botucatu, SP, Brazil.ORCID 0000-0003-1967-1990
Universidade Estadual Paulista (Unesp) · BRUniversidade Estadual de Campinas (UNICAMP) · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this work, we aimed to develop an automatic algorithm for the quantification of total volume and lung impairments in four different diseases. The quantification was completely automatic based upon high resolution computed tomography exams. The algorithm was capable of measuring volume and differentiating pulmonary involvement including inflammatory process and fibrosis, emphysema, and ground-glass opacities. The algorithm classifies the percentage of each pulmonary involvement when compared to the entire lung volume. Our algorithm was applied to four different patients groups: no lung disease patients, patients diagnosed with SARS-CoV-2, patients with chronic obstructive pulmonary disease, and patients with paracoccidioidomycosis. The quantification results were compared with a semi-automatic algorithm previously validated. Results confirmed that the automatic approach has a good agreement with the semi-automatic. Bland-Altman (B&A) demonstrated a low dispersion when comparing total lung volume, and also when comparing each lung impairment individually. Linear regression adjustment achieved an R value of 0.81 when comparing total lung volume between both methods. Our approach provides a reliable quantification process for physicians, thus impairments measurements contributes to support prognostic decisions in important lung diseases including the infection of SARS-CoV-2.

Indexed as

AlgorithmsTomography, X-Ray ComputedAdultAgedCOVID-19FemaleHumansLungLung Volume MeasurementsMaleMiddle AgedParacoccidioidesParacoccidioidomycosisPulmonary Disease, Chronic ObstructiveSARS-CoV-2

Identifiers

PMID34111131
PMCPMC8191897
OpenAlexW3172036857

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.