Evidence map›Paper›PMID 34109316›Full record

ArticleNature cancer2020

An in vivo genome-wide CRISPR screen identifies the RNA-binding protein Staufen2 as a key regulator of myeloid leukemia.

Jeevisha Bajaj, Michael Hamilton, Yutaka Shima, Kendall Chambers, Kyle Spinler, Eric L Van Nostrand, Brian A Yee, Steven M Blue, Michael Chen, David Rizzeri and 8 more

Open access · greenAbstract read
In one paragraph

Article in Nature cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Jeevisha BajajDepartment of Pharmacology, University of California San Diego, School of Medicine, La Jolla, CA, USA. Jeevisha_Bajaj@URMC.Rochester.edu.ORCID http://orcid.org/0000-0002-8411-6056
Michael Hamilton *Department of Pharmacology, University of California San Diego, School of Medicine, La Jolla, CA, USA.
Yutaka Shima *Department of Pharmacology, University of California San Diego, School of Medicine, La Jolla, CA, USA.
Kendall ChambersDepartment of Pharmacology, University of California San Diego, School of Medicine, La Jolla, CA, USA.
Kyle SpinlerDepartment of Pharmacology, University of California San Diego, School of Medicine, La Jolla, CA, USA.
Eric L Van NostrandSanford Consortium for Regenerative Medicine, La Jolla, CA, USA.
Brian A YeeSanford Consortium for Regenerative Medicine, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5615-8550
Steven M BlueSanford Consortium for Regenerative Medicine, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-0279-6690
Michael ChenDepartment of Pharmacology, University of California San Diego, School of Medicine, La Jolla, CA, USA.
David RizzeriDivision of Hematologic Malignancies and Cellular Therapy, Duke Cancer Institute, Durham, NC, USA.
Charles ChuahDepartment of Haematology, Singapore General Hospital, Cancer and Stem Cell Biology Program, Duke-NUS Graduate Medical School, Singapore, Singapore.
Vivian G OehlerClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
H Elizabeth BroomeMoores Cancer Center, University of California San Diego, School of Medicine, La Jolla, CA, USA.
Roman SasikCenter for Computational Biology and Bioinformatics, University of California San Diego, School of Medicine, La Jolla, CA, USA.
James Scott-BrowneDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
Anjana RaoDepartment of Pharmacology, University of California San Diego, School of Medicine, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-1870-1775
Gene W YeoSanford Consortium for Regenerative Medicine, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-0799-6037
Tannishtha ReyaDepartment of Pharmacology, University of California San Diego, School of Medicine, La Jolla, CA, USA. treya@health.ucsd.edu.ORCID http://orcid.org/0000-0002-5956-8536
University of California San Diego · USLa Jolla Institute for Immunology · USDuke Medical Center · USFred Hutch Cancer Center · USSingapore General Hospital · SGUC San Diego Health System · USUniversity of Rochester Medical Center · US

Funding

SIGNAL TRANSDUCTION AND GENE INDUCTION IN T LYMPHOCYTESR01AI040127 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI HOGAN, PATRICK, RAO, ANJANA · 1996 to 2025
$13.3M
Comprhensive analysis of functional RNA elements encoded in the human genomeU54HG007005 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2012 to 2017
$12.5M
Contemporary Approaches to Cancer Cell Signaling and CommunicationT32CA009523 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DONOGHUE, DANIEL J, YANG, JING · 1985 to 2025
$12.1M
Molecular strategies for early detection and targeting of cancerR35CA197699 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Tannishtha Reya · 2015 to 2026
$11.2M
The TET-DNMT-ASXL1-OGT axis: relevance to clonal hematopoiesis, heterochromatin integrity and cancerR35CA210043 · NCI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Anjana Rao · 2016 to 2026
$10.6M
A Comprehensive Functional Map of Human Protein-RNA InteractionsU41HG009889 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R., YEO, EUGENE WEI-MING · 2018 to 2021
$9.4M
Blood Cells in Hemostasis and ThrombosisT32HL086344 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GINSBERG, MARK HOWARD · 2008 to 2023
$4.4M
Molecular Determinants of Asymmetric DivisionR01DK099335 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI REYA, TANNISHTHA · 2014 to 2017
$1.5M
Imaging self-renewal and transformation in hematopoietic stem cellsDP1CA174422 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI REYA, TANNISHTHA · 2012 to 2013
$1.5M
Robust, high-throughput identification of RNA processing regulators and regulatory networks genome-wideR00HG009530 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI VAN NOSTRAND, ERIC LYMAN · 2020 to 2022
$747k
Robust, high-throughput identification of RNA processing regulators and regulatory networks genome-wideK99HG009530 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VAN NOSTRAND, ERIC LYMAN · 2017 to 2018
$250k
NCI NIH HHS DP1 CA174422NCI NIH HHS R35 CA197699NCI NIH HHS R35 CA210043NCI NIH HHS T32 CA009523NHGRI NIH HHS K99 HG009530NHGRI NIH HHS R00 HG009530NHGRI NIH HHS U41 HG009889NHGRI NIH HHS U54 HG007005NHLBI NIH HHS T32 HL086344NIAID NIH HHS R01 AI040127NIDDK NIH HHS R01 DK099335
6 · The paper itself

Abstract

Aggressive myeloid leukemias such as blast crisis chronic myeloid leukemia and acute myeloid leukemia remain highly lethal. Here we report a genome-wide in vivo CRISPR screen to identify new dependencies in this disease. Among these, RNA-binding proteins (RBPs) in general, and the double-stranded RBP Staufen2 (Stau2) in particular, emerged as critical regulators of myeloid leukemia. In a newly developed knockout mouse, loss of Stau2 led to a profound decrease in leukemia growth and improved survival in mouse models of the disease. Further, Stau2 was required for growth of primary human blast crisis chronic myeloid leukemia and acute myeloid leukemia. Finally, integrated analysis of CRISPR, eCLIP and RNA-sequencing identified Stau2 as a regulator of chromatin-binding factors, driving global alterations in histone methylation. Collectively, these data show that in vivo CRISPR screening is an effective tool for defining new regulators of myeloid leukemia progression and identify the double-stranded RBP Stau2 as a critical dependency of myeloid malignancies.

Indexed as

Blast CrisisLeukemia, Myeloid, AcuteNerve Tissue ProteinsRNA-Binding ProteinsAnimalsClustered Regularly Interspaced Short Palindromic RepeatsGenomeMiceNerve Tissue ProteinsRNA-Binding Proteinsstau2 protein, mouse

Identifiers

PMID34109316
PMCPMC8186448
OpenAlexW3017386218

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.