ArticleKDD : proceedings. International Conference on Knowledge Discovery & Data Mining2020
LogPar: Logistic PARAFAC2 Factorization for Temporal Binary Data with Missing Values.
Article in KDD : proceedings. International Conference on Knowledge Discovery & Data Mining, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Who cites it
7 citing papers in PubMed.
- Article
- Unraveling Complex Temporal Patterns in EHRs via Robust Irregular Tensor Factorization.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2025Article
- Characterizing human postprandial metabolic response using multiway data analysis.Metabolomics : Official journal of the Metabolomic Society · 2024Article
- MULTIPAR: Supervised Irregular Tensor Factorization with Multi-task Learning for Computational Phenotyping.Proceedings of machine learning research · 2023Article
- Exploring dynamic metabolomics data with multiway data analysis: a simulation study.BMC bioinformatics · 2022Article
- Tracing Evolving Networks Using Tensor Factorizations vs. ICA-Based Approaches.Frontiers in neuroscience · 2022Article
- The Effectiveness of Multitask Learning for Phenotyping with Electronic Health Records Data.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2019Article
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Authors and funding
6 authors.
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Abstract
Binary data with one-class missing values are ubiquitous in real-world applications. They can be represented by irregular tensors with varying sizes in one dimension, where value one means presence of a feature while zero means unknown (i.e., either presence or absence of a feature). Learning accurate low-rank approximations from such binary irregular tensors is a challenging task. However, none of the existing models developed for factorizing irregular tensors take the missing values into account, and they assume Gaussian distributions, resulting in a distribution mismatch when applied to binary data. In this paper, we propose Logistic PARAFAC2 (LogPar) by modeling the binary irregular tensor with Bernoulli distribution parameterized by an underlying real-valued tensor. Then we approximate the underlying tensor with a positive-unlabeled learning loss function to account for the missing values. We also incorporate uniqueness and temporal smoothness regularization to enhance the interpretability. Extensive experiments using large-scale real-world datasets show that LogPar outperforms all baselines in both irregular tensor completion and downstream predictive tasks. For the irregular tensor completion, LogPar achieves up to 26% relative improvement compared to the best baseline. Besides, LogPar obtains relative improvement of 13.2% for heart failure prediction and 14% for mortality prediction on average compared to the state-of-the-art PARAFAC2 models.
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