Evidence map›Paper›PMID 34109054›Full record

ArticleKDD : proceedings. International Conference on Knowledge Discovery & Data Mining2020

LogPar: Logistic PARAFAC2 Factorization for Temporal Binary Data with Missing Values.

Kejing Yin, Ardavan Afshar, Joyce C Ho, William K Cheung, Chao Zhang, Jimeng Sun

Abstract read
In one paragraph

Article in KDD : proceedings. International Conference on Knowledge Discovery & Data Mining, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Unraveling Complex Temporal Patterns in EHRs via Robust Irregular Tensor Factorization.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2025
    Article
  3. Characterizing human postprandial metabolic response using multiway data analysis.Metabolomics : Official journal of the Metabolomic Society · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. The Effectiveness of Multitask Learning for Phenotyping with Electronic Health Records Data.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kejing YinHong Kong Baptist University.
Ardavan AfsharGeorgia Institute of Technology.
Joyce C HoEmory University.
William K CheungHong Kong Baptist University.
Chao ZhangGeorgia Institute of Technology.
Jimeng SunUniversity of Illinois, Urbana-Champaign.

Funding

Reducing Disparities among Kidney Transplant RecipientsR01MD011682 · NIMHD · EMORY UNIVERSITY · PI ADAMS, ANDREW B, PATZER, RACHEL E · 2017 to 2021
$2.4M
Interpretable Deep Learning Model for Longitudinal Electronic Health Records and Applications to Heart Failure PredictionR56HL138415 · NHLBI · GEORGIA INSTITUTE OF TECHNOLOGY · PI ZHANG, CHAO · 2017 to 2017
$756k
Leveraging modern analytic approaches to improve diabetes outcomesK01LM012924 · NLM · EMORY UNIVERSITY · PI HO, JOYCE C. · 2018 to 2020
$545k
NHLBI NIH HHS R56 HL138415NIMHD NIH HHS R01 MD011682NLM NIH HHS K01 LM012924
6 · The paper itself

Abstract

Binary data with one-class missing values are ubiquitous in real-world applications. They can be represented by irregular tensors with varying sizes in one dimension, where value one means presence of a feature while zero means unknown (i.e., either presence or absence of a feature). Learning accurate low-rank approximations from such binary irregular tensors is a challenging task. However, none of the existing models developed for factorizing irregular tensors take the missing values into account, and they assume Gaussian distributions, resulting in a distribution mismatch when applied to binary data. In this paper, we propose Logistic PARAFAC2 (LogPar) by modeling the binary irregular tensor with Bernoulli distribution parameterized by an underlying real-valued tensor. Then we approximate the underlying tensor with a positive-unlabeled learning loss function to account for the missing values. We also incorporate uniqueness and temporal smoothness regularization to enhance the interpretability. Extensive experiments using large-scale real-world datasets show that LogPar outperforms all baselines in both irregular tensor completion and downstream predictive tasks. For the irregular tensor completion, LogPar achieves up to 26% relative improvement compared to the best baseline. Besides, LogPar obtains relative improvement of 13.2% for heart failure prediction and 14% for mortality prediction on average compared to the state-of-the-art PARAFAC2 models.

Indexed as

binary tensor completioncomputational phenotypingPARAFAC2 factorizationtensor factorization

Identifiers

PMID34109054
PMCPMC8186437

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.