Evidence map›Paper›PMID 34108662›Full record

ArticleNature cell biology2021

Elongation factor ELOF1 drives transcription-coupled repair and prevents genome instability.

Marit E Geijer, Di Zhou, Kathiresan Selvam, Barbara Steurer, Chirantani Mukherjee, Bastiaan Evers, Simona Cugusi, Marvin van Toorn, Melanie van der Woude, Roel C Janssens and 21 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Nature cell biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
6.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 96 citations in OpenAlex.

  1. Review
  2. Article
  3. Topology Resetting During Transcription-Coupled Nucleotide Excision Repair.International journal of molecular sciences · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Transcription-Coupled Repair and R-Loop Crosstalk in Genome Stability.International journal of molecular sciences · 2025
    Review
  19. Article
  20. Mechanisms of DNA repair and mutagenesis induced by acetaldehyde, acrolein, aristolochic acids, and vinyl chloride.Journal of environmental science and health. Part C, Toxicology and carcinogenesis · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

31 authors at 6 institutions in 3 countries.

Marit E GeijerDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0001-9453-6997
Di Zhou *Department of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.
Kathiresan Selvam *School of Molecular Biosciences, Washington State University, Pullman, WA, USA.ORCID http://orcid.org/0000-0001-7433-2268
Barbara Steurer *Department of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.
Chirantani Mukherjee *Department of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-7738-5135
Bastiaan Evers *Oncode Institute, Division of Molecular Carcinogenesis, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Simona Cugusi *Mechanisms of Transcription Laboratory, The Francis Crick Institute, London, UK.
Marvin van ToornDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-3992-9090
Melanie van der WoudeDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.
Roel C JanssensDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.
Yannick P KokDepartment of Medical Oncology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
Wenzhi GongDepartment of Comparative Biomedical Sciences, School of Veterinary Medicine, Louisiana State University, Baton Rouge, LA, USA.
Anja RaamsDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.
Calvin S Y LoDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.
Joyce H G LebbinkDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.
Bart GevertsErasmus Optical Imaging Center, Erasmus University Medical Center Rotterdam, Rotterdam, The Netherlands.
Dalton A PlummerSchool of Molecular Biosciences, Washington State University, Pullman, WA, USA.
Karel BezstarostiProteomics Center, Erasmus University Medical Center, Rotterdam, The Netherlands.
Arjan F TheilDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.
Richard MitterBioinformatics and Biostatistics, The Francis Crick Institute, London, UK.
Adriaan B HoutsmullerErasmus Optical Imaging Center, Erasmus University Medical Center Rotterdam, Rotterdam, The Netherlands.
Wim VermeulenDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0003-3616-734X
Jeroen A A DemmersProteomics Center, Erasmus University Medical Center, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-8757-9611
Shisheng LiDepartment of Comparative Biomedical Sciences, School of Veterinary Medicine, Louisiana State University, Baton Rouge, LA, USA.ORCID http://orcid.org/0000-0002-2380-2132
Marcel A T M van VugtDepartment of Medical Oncology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.ORCID http://orcid.org/0000-0002-3202-4678
Hannes LansDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0003-4417-5358
René BernardsOncode Institute, Division of Molecular Carcinogenesis, The Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0001-8677-3423
Jesper Q SvejstrupMechanisms of Transcription Laboratory, The Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0003-4964-6147
Arnab Ray ChaudhuriDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.
John J WyrickSchool of Molecular Biosciences, Washington State University, Pullman, WA, USA.
Jurgen A MarteijnDepartment of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands. J.Marteijn@erasmusmc.nl.ORCID http://orcid.org/0000-0001-9321-518X
Erasmus MC · NLThe Francis Crick Institute · GBWashington State University · USLouisiana State University · USThe Netherlands Cancer Institute · NLUniversity Medical Center Groningen · NL

Funding

Regulation of DNA Excision Repair in ChromatinR01ES028698 · NIEHS · WASHINGTON STATE UNIVERSITY · PI John J Wyrick · 2018 to 2026
$2.7M
UV damage stimulation by ETS transcription factors in skin cancerR21ES029655 · NIEHS · WASHINGTON STATE UNIVERSITY · PI WYRICK, JOHN J · 2019 to 2020
$435k
TC-NER IN THE REPAIR AND MUTAGENESIS OF DNA ALKYLATION DAMAGER21ES029302 · NIEHS · WASHINGTON STATE UNIVERSITY · PI MAO, PENG, WYRICK, JOHN J · 2018 to 2019
$421k
Cancer Research UK 11008Cancer Research UK 11567Cancer Research UK FC001166Medical Research Council FC001166NIEHS NIH HHS R01 ES028698NIEHS NIH HHS R21 ES029302NIEHS NIH HHS R21 ES029655Wellcome Trust FC001166
6 · The paper itself

Abstract

Correct transcription is crucial for life. However, DNA damage severely impedes elongating RNA polymerase II, causing transcription inhibition and transcription-replication conflicts. Cells are equipped with intricate mechanisms to counteract the severe consequence of these transcription-blocking lesions. However, the exact mechanism and factors involved remain largely unknown. Here, using a genome-wide CRISPR-Cas9 screen, we identified the elongation factor ELOF1 as an important factor in the transcription stress response following DNA damage. We show that ELOF1 has an evolutionarily conserved role in transcription-coupled nucleotide excision repair (TC-NER), where it promotes recruitment of the TC-NER factors UVSSA and TFIIH to efficiently repair transcription-blocking lesions and resume transcription. Additionally, ELOF1 modulates transcription to protect cells against transcription-mediated replication stress, thereby preserving genome stability. Thus, ELOF1 protects the transcription machinery from DNA damage via two distinct mechanisms.

Indexed as

DNA DamageDNA RepairGenomic InstabilityTranscription Elongation, GeneticCarrier ProteinsCRISPR-Cas SystemsEvolution, MolecularHCT116 CellsHumansPeptide Elongation Factor 1RNA Polymerase IITranscription Factor TFIIHUbiquitinationCarrier ProteinsPeptide Elongation Factor 1RNA Polymerase IITranscription Factor TFIIHUVSSA protein, human

Identifiers

PMID34108662
PMCPMC7611218
OpenAlexW3169377525

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.