Evidence map›Paper›PMID 34108640›Full record

ArticleJournal of human genetics2021

Structural and numerical Y chromosomal variations in elderly men identified through multiplex ligation-dependent probe amplification.

Yasuko Ogiwara, Mami Miyado, Erina Suzuki, Sumpei Niida, Kouichi Ozaki, Maki Fukami

Abstract read
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In one paragraph

Article in Journal of human genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Mosaic loss of the Y chromosome and men's health.Reproductive medicine and biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Yasuko Ogiwara *Department of Molecular Endocrinology, National Research Institute for Child Health and Development, Tokyo, Japan.
Mami Miyado *Department of Molecular Endocrinology, National Research Institute for Child Health and Development, Tokyo, Japan.
Erina SuzukiDepartment of Molecular Endocrinology, National Research Institute for Child Health and Development, Tokyo, Japan.
Sumpei NiidaMedical genome center, National Center for Geriatrics and Gerontology Research Institute, Obu, Japan.
Kouichi OzakiMedical genome center, National Center for Geriatrics and Gerontology Research Institute, Obu, Japan.ORCID http://orcid.org/0000-0003-0028-1570
Maki FukamiDepartment of Molecular Endocrinology, National Research Institute for Child Health and Development, Tokyo, Japan. fukami-m@ncchd.go.jp.ORCID http://orcid.org/0000-0001-9971-4035
National Center For Child Health and Development · JPNational Center for Geriatrics and Gerontology · JPTohoku University · JP

Funding

Japan Agency for Medical Research and Development (AMED) 20ek0109464h0001National Center for Child Health and Development (NCCHD) 2019A-1
6 · The paper itself

Abstract

Human Y chromosomes frequently acquire structural and numerical alterations. Known alterations include germline copy-number variations (CNVs) in the azoospermia factor (AZF) region and somatic mosaic loss of the Y chromosome (mLOY). Here, we explored Y chromosomal variations in 160 Japanese men aged 75-90 years. Multiplex ligation-dependent probe amplification (MLPA) identified ten types of AZF-linked CNVs in 77 men and mLOY of various degrees in 37. Seventeen men carried both a CNV and mLOY. MLOY levels estimated by MLPA were closely correlated with those determined by droplet digital PCR. No association was found between AZF-linked CNVs and the frequency or levels of mLOY. These results emphasize the high frequency and large inter-individual variability of AZF-linked CNVs and mLOY, and demonstrate the usefulness of MLPA in the detection of these variations. More importantly, this study provides the first evidence that AZF-linked CNVs do not increase the risk of aging-related mLOY.

Indexed as

Chromosome AberrationsGenetic VariationPhenotypeAgedChromosomes, Human, YDNA Copy Number VariationsGenetic Association StudiesHumansMale

Identifiers

PMID34108640
OpenAlexW3169792039

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.