Evidence map›Paper›PMID 34108567›Full record

ArticleScientific reports2021

Large-scale comparative analysis of cytogenetic markers across Lepidoptera.

Irena Provazníková, Martina Hejníčková, Sander Visser, Martina Dalíková, Leonela Z Carabajal Paladino, Magda Zrzavá, Anna Voleníková, František Marec, Petr Nguyen

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. The genome sequence of a caddisfly,Wellcome open research · 2023
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Irena ProvazníkováFaculty of Science, University of South Bohemia, České Budějovice, Czech Republic.ORCID 0000-0003-2336-458X
Martina HejníčkováFaculty of Science, University of South Bohemia, České Budějovice, Czech Republic.ORCID 0000-0002-9303-305X
Sander VisserFaculty of Science, University of South Bohemia, České Budějovice, Czech Republic.ORCID 0000-0002-0953-0871
Martina DalíkováFaculty of Science, University of South Bohemia, České Budějovice, Czech Republic.ORCID 0000-0002-0266-8894
Leonela Z Carabajal PaladinoThe Pirbright Institute, Surrey, UK.ORCID 0000-0001-9312-0260
Magda ZrzaváFaculty of Science, University of South Bohemia, České Budějovice, Czech Republic.ORCID 0000-0001-8482-9614
Anna VoleníkováFaculty of Science, University of South Bohemia, České Budějovice, Czech Republic.ORCID 0000-0002-9504-8044
František MarecInstitute of Entomology, Biology Centre CAS, České Budějovice, Czech Republic.ORCID 0000-0002-6745-5603
Petr NguyenFaculty of Science, University of South Bohemia, České Budějovice, Czech Republic. petr.nguyen@prf.jcu.cz.ORCID 0000-0003-1395-4287

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fluorescence in situ hybridization (FISH) allows identification of particular chromosomes and their rearrangements. Using FISH with signal enhancement via antibody amplification and enzymatically catalysed reporter deposition, we evaluated applicability of universal cytogenetic markers, namely 18S and 5S rDNA genes, U1 and U2 snRNA genes, and histone H3 genes, in the study of the karyotype evolution in moths and butterflies. Major rDNA underwent rather erratic evolution, which does not always reflect chromosomal changes. In contrast, the hybridization pattern of histone H3 genes was well conserved, reflecting the stable organisation of lepidopteran genomes. Unlike 5S rDNA and U1 and U2 snRNA genes which we failed to detect, except for 5S rDNA in a few representatives of early diverging lepidopteran lineages. To explain the negative FISH results, we used quantitative PCR and Southern hybridization to estimate the copy number and organization of the studied genes in selected species. The results suggested that their detection was hampered by long spacers between the genes and/or their scattered distribution. Our results question homology of 5S rDNA and U1 and U2 snRNA loci in comparative studies. We recommend the use of histone H3 in studies of karyotype evolution.

Indexed as

Evolution, MolecularAnimalsButterfliesChromosome MappingCytogenetic AnalysisDNA, RibosomalGenomeIn Situ Hybridization, FluorescenceMothsRNA, Ribosomal, 18SRNA, Ribosomal, 5SRNA, Small NuclearDNA, RibosomalRNA, Ribosomal, 18SRNA, Ribosomal, 5SRNA, Small NuclearU2 small nuclear RNA

Identifiers

PMID34108567
PMCPMC8190105

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.