Evidence map›Paper›PMID 34108481›Full record

ArticleNature communications2021

Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine.

Michael Prattes, Irina Grishkovskaya, Victor-Valentin Hodirnau, Ingrid Rössler, Isabella Klein, Christina Hetzmannseder, Gertrude Zisser, Christian C Gruber, Karl Gruber, David Haselbach and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
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  6. Ribosome biogenesis and function in development and disease.Development (Cambridge, England) · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Michael PrattesInstitute of Molecular Biosciences, University of Graz, Graz, Austria.ORCID 0000-0002-2526-9896
Irina GrishkovskayaResearch Institute of Molecular Pathology (IMP), Vienna BioCenter, Vienna, Austria.
Victor-Valentin HodirnauInstitute of Science and Technology Austria, Klosterneuburg, Austria.ORCID 0000-0003-3904-947X
Ingrid RösslerInstitute of Molecular Biosciences, University of Graz, Graz, Austria.
Isabella KleinInstitute of Molecular Biosciences, University of Graz, Graz, Austria.
Christina HetzmannsederInstitute of Molecular Biosciences, University of Graz, Graz, Austria.
Gertrude ZisserInstitute of Molecular Biosciences, University of Graz, Graz, Austria.
Christian C GruberInstitute of Molecular Biosciences, University of Graz, Graz, Austria.
Karl GruberInstitute of Molecular Biosciences, University of Graz, Graz, Austria.ORCID 0000-0002-3485-9740
David HaselbachResearch Institute of Molecular Pathology (IMP), Vienna BioCenter, Vienna, Austria. david.haselbach@imp.ac.at.ORCID 0000-0002-5276-5633
Helmut BerglerInstitute of Molecular Biosciences, University of Graz, Graz, Austria. helmut.bergler@uni-graz.at.ORCID 0000-0002-7724-309X
University of Graz · ATResearch Institute of Molecular Pathology · ATInstitute of Science and Technology Austria · AT

Funding

Austrian Science Fund FWF P 32536Austrian Science Fund FWF P 32977
6 · The paper itself

Abstract

The hexameric AAA-ATPase Drg1 is a key factor in eukaryotic ribosome biogenesis and initiates cytoplasmic maturation of the large ribosomal subunit by releasing the shuttling maturation factor Rlp24. Drg1 monomers contain two AAA-domains (D1 and D2) that act in a concerted manner. Rlp24 release is inhibited by the drug diazaborine which blocks ATP hydrolysis in D2. The mode of inhibition was unknown. Here we show the first cryo-EM structure of Drg1 revealing the inhibitory mechanism. Diazaborine forms a covalent bond to the 2'-OH of the nucleotide in D2, explaining its specificity for this site. As a consequence, the D2 domain is locked in a rigid, inactive state, stalling the whole Drg1 hexamer. Resistance mechanisms identified include abolished drug binding and altered positioning of the nucleotide. Our results suggest nucleotide-modifying compounds as potential novel inhibitors for AAA-ATPases.

Indexed as

AAA DomainAdenosine TriphosphatasesATPases Associated with Diverse Cellular ActivitiesBinding SitesBoron CompoundsDrug ResistanceEnzyme ActivationMutationNucleotidesSaccharomyces cerevisiae Proteins1,2-dihydro-1-hydroxy-6-methyl-2-(propanesulfonyl)-thieno(3,2D)(1,2,3)-diazaborineAdenosine TriphosphatasesAFG2 protein, S cerevisiaeATPases Associated with Diverse Cellular ActivitiesBoron CompoundsNucleotidesSaccharomyces cerevisiae Proteins

Identifiers

PMID34108481
PMCPMC8190095
OpenAlexW3168421815

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.