Evidence map›Paper›PMID 34108230›Full record

ArticleRNA (New York, N.Y.)2021

Argonaute binding within human nuclear RNA and its impact on alternative splicing.

Yongjun Chu, Shinnichi Yokota, Jing Liu, Audrius Kilikevicius, Krystal C Johnson, David R Corey

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
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  15. Age and 17β-Estradiol (ENon-coding RNA · 2023
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yongjun Chu *UT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, Texas 75205, USA.
Shinnichi Yokota *UT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, Texas 75205, USA.
Jing Liu *UT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, Texas 75205, USA.
Audrius KilikeviciusUT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, Texas 75205, USA.
Krystal C JohnsonUT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, Texas 75205, USA.
David R CoreyUT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, Texas 75205, USA.
Southwestern Medical Center · US

Funding

Recognition of Cellular Targets by single and double-stranded nucleic acidsR35GM118103 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI David R Corey · 2016 to 2026
$5.7M
Mechanism of RNA-Mediated Control of Transcription or SplicingR01GM106151 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI COREY, DAVID R · 2014 to 2016
$859k
Defining the Boundaries of RNAi in a cellF31GM137591 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI JOHNSON, KRYSTAL COURTNEY · 2020 to 2022
$95k
NIGMS NIH HHS F31 GM137591NIGMS NIH HHS R01 GM106151NIGMS NIH HHS R35 GM118103
6 · The paper itself

Abstract

Mammalian RNA interference (RNAi) is often linked to the regulation of gene expression in the cytoplasm. Synthetic RNAs, however, can also act through the RNAi pathway to regulate transcription and splicing. While nuclear regulation by synthetic RNAs can be robust, a critical unanswered question is whether endogenous functions for nuclear RNAi exist in mammalian cells. Using enhanced crosslinking immunoprecipitation (eCLIP) in combination with RNA sequencing (RNA-seq) and multiple

Indexed as

Alternative SplicingArgonaute ProteinsBase PairingBase SequenceBinding SitesCell NucleusCytoplasmEukaryotic Initiation FactorsExonsHCT116 CellsHumansImmunoprecipitationIntronsMicroRNAsOligoribonucleotidesProtein BindingAGO1 protein, humanAGO2 protein, humanAGO3 protein, humanArgonaute ProteinsEukaryotic Initiation FactorsMicroRNAsMIRN149 microRNA, humanMIRN20a microRNA, humanOligoribonucleotidesRNA, NuclearArgonautemicro RNAmiRNARNARNAiRNA interference

Identifiers

PMID34108230
PMCPMC8370746
OpenAlexW3169859220

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.