Evidence map›Paper›PMID 34106958›Full record

ArticlePloS one2021

Genetic diversity and population structure of Cynara cardunculus L. in southern Portugal.

Maria Miguel Castro, Daniela Rosa, Ana M Ferro, Ana Faustino, Ana Paulino, Teresa Brás, Eliana Machado, Carla Pinto Cruz, Anabela D F Belo, Paula Nozes and 6 more

Abstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. The Employment of GeneraNutrients · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Maria Miguel CastroCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL)/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.
Daniela RosaCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL)/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.
Ana M FerroCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL)/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.
Ana FaustinoCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL)/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.
Ana PaulinoCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL)/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.
Teresa BrásCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL)/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.
Eliana MachadoMED-Instituto Mediterrâneo para a Agricultura, Ambiente e Desenvolvimento, Universidade de Évora, Ap 94, Évora, Portugal.
Carla Pinto CruzAmbiente e Desenvolvimento & Departamento de Biologia, MED - Instituto Mediterrâneo para a Agricultura, Escola de Ciências e Tecnologia, Universidade de Évora, Ap 94, Évora, Portugal.
Anabela D F BeloAmbiente e Desenvolvimento & Departamento de Biologia, MED - Instituto Mediterrâneo para a Agricultura, Escola de Ciências e Tecnologia, Universidade de Évora, Ap 94, Évora, Portugal.ORCID 0000-0002-4699-3824
Paula NozesDepartamento de Biociências/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.
João PortugalDepartamento de Biociências/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.
Sofia RamôaDepartamento de Biociências/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.
Diogo MendonçaInstituto Nacional de Investigação Agrária e Veterinária I.P. (INIAV IP), Unidade Estratégica de Biotecnologia e Recursos Genéticos, I.P., Oeiras, Portugal.
Fernanda SimõesInstituto Nacional de Investigação Agrária e Veterinária I.P. (INIAV IP), Unidade Estratégica de Biotecnologia e Recursos Genéticos, I.P., Oeiras, Portugal.
Maria F DuarteCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL)/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.
Liliana MarumCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL)/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.ORCID 0000-0002-6938-479X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cynara cardunculus L. is a cardoon species native to the Mediterranean region, which is composed of three botanical taxa, each having distinct biological characteristics. The aim of this study was to examine wild populations of C. cardunculus established in Portugal, in order to determine their genetic diversity, geographic distribution, and population structure. Based on SSR markers, 121 individuals of C. cardunculus from 17 wild populations of the Portuguese Alentejo region were identified and analysed. Ten SSRs were found to be efficient markers in the genetic diversity analysis. The total number of alleles ranged from 9 to 17 per locus. The expected and observed means in heterozygosity, by population analysed, were 0.591 and 0.577, respectively. The wild population exhibited a high level of genetic diversity at the species level. The highest proportion of genetic variation was identified within a geographic group, while variation was lower among groups. Geographic areas having highest genetic diversity were identified in Alvito, Herdade da Abóboda, Herdade da Revilheira and Herdade de São Romão populations. Moreover, significant genetic differentiation existed between wild populations from North-Alentejo geographic locations (Arraiolos, Évora, Monte da Chaminé) and Centro Hortofrutícola, compared with other populations. This study reports genetic diversity among a representative number of wild populations and genotypes of C. cardunculus from Portugal. These results will provide valuable information towards future management of C. cardunculus germplasm.

Indexed as

Genetic VariationAllelesCynaraDNA, PlantGenotypeGeographyMediterranean RegionMicrosatellite RepeatsPhylogenyPolymorphism, GeneticPopulation DynamicsPortugalSeasonsSpecies SpecificityDNA, Plant

Identifiers

PMID34106958
PMCPMC8189484

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.