Evidence map›Paper›PMID 34106412›Full record

ArticleVirus genes2021

Full genome-based characterization of G4P[6] rotavirus strains from diarrheic patients in Thailand: Evidence for independent porcine-to-human interspecies transmission events.

Ratana Tacharoenmuang, Ratigorn Guntapong, Sompong Upachai, Phakapun Singchai, Saori Fukuda, Tomihiko Ide, Riona Hatazawa, Karun Sutthiwarakom, Santip Kongjorn, Napa Onvimala and 12 more

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 3 institutions in 2 countries.

Ratana TacharoenmuangNational Institute of Health, Department of Medical Sciences, Nonthaburi, 11000, Thailand.
Ratigorn GuntapongNational Institute of Health, Department of Medical Sciences, Nonthaburi, 11000, Thailand.
Sompong UpachaiNational Institute of Health, Department of Medical Sciences, Nonthaburi, 11000, Thailand.
Phakapun SingchaiNational Institute of Health, Department of Medical Sciences, Nonthaburi, 11000, Thailand.
Saori FukudaDepartment of Virology and Parasitology, Fujita Health University School of Medicine, Toyoake, Aichi, 470-1192, Japan.
Tomihiko IdeDepartment of Virology and Parasitology, Fujita Health University School of Medicine, Toyoake, Aichi, 470-1192, Japan.
Riona HatazawaDepartment of Virology and Parasitology, Fujita Health University School of Medicine, Toyoake, Aichi, 470-1192, Japan.
Karun SutthiwarakomNational Institute of Health, Department of Medical Sciences, Nonthaburi, 11000, Thailand.
Santip KongjornNational Institute of Health, Department of Medical Sciences, Nonthaburi, 11000, Thailand.
Napa OnvimalaNational Institute of Health, Department of Medical Sciences, Nonthaburi, 11000, Thailand.
Tipsuda LuechakhamNational Institute of Health, Department of Medical Sciences, Nonthaburi, 11000, Thailand.
Kriangsak RuchusatsawastNational Institute of Health, Department of Medical Sciences, Nonthaburi, 11000, Thailand.
Yoshiki KawamuraDepartment of Pediatrics, Fujita Health University School of Medicine, Toyoake, Aichi, 470-1192, Japan.
Busarawan SriwanthanaMedical Sciences Technical Office, Department of Medical Sciences, Nonthaburi, 11000, Thailand.
Kazushi MotomuraThailand-Japan Research Collaboration Center on Emerging and Re-Emerging Infections, Nonthaburi, 11000, Thailand.
Masashi TatsumiThailand-Japan Research Collaboration Center on Emerging and Re-Emerging Infections, Nonthaburi, 11000, Thailand.
Naokazu TakedaThailand-Japan Research Collaboration Center on Emerging and Re-Emerging Infections, Nonthaburi, 11000, Thailand.
Tetsushi YoshikawaDepartment of Pediatrics, Fujita Health University School of Medicine, Toyoake, Aichi, 470-1192, Japan.
Takayuki MurataDepartment of Virology and Parasitology, Fujita Health University School of Medicine, Toyoake, Aichi, 470-1192, Japan.
Ballang UppapongNational Institute of Health, Department of Medical Sciences, Nonthaburi, 11000, Thailand.
Koki TaniguchiDepartment of Virology and Parasitology, Fujita Health University School of Medicine, Toyoake, Aichi, 470-1192, Japan.
Satoshi KomotoDepartment of Virology and Parasitology, Fujita Health University School of Medicine, Toyoake, Aichi, 470-1192, Japan. satoshik@fujita-hu.ac.jp.ORCID http://orcid.org/0000-0003-2810-8163
Department of Medical Sciences · THFujita Health University · JPOsaka Prefectural Institute of Public Health · JP

Funding

Japan Agency for Medical Research and Development 19fk0108099s0301, 20fk0108099s0302
6 · The paper itself

Abstract

The exact evolutionary patterns of human G4P[6] rotavirus strains remain to be elucidated. Such strains possess unique and strain-specific genotype constellations, raising the question of whether G4P[6] strains are primarily transmitted via independent interspecies transmission or human-to-human transmission after interspecies transmission. Two G4P[6] rotavirus strains were identified in fecal specimens from hospitalized patients with severe diarrhea in Thailand, namely, DU2014-259 (RVA/Human-wt/THA/DU2014-259/2014/G4P[6]) and PK2015-1-0001 (RVA/Human-wt/THA/PK2015-1-0001/2015/G4P[6]). Here, we analyzed the full genomes of the two human G4P[6] strains, which provided the opportunity to study and confirm their evolutionary origin. On whole genome analysis, both strains exhibited a unique Wa-like genotype constellation of G4-P[6]-I1-R1-C1-M1-A8-N1-T1-E1-H1. The NSP1 genotype A8 is commonly found in porcine rotavirus strains. Furthermore, on phylogenetic analysis, each of the 11 genes of strains DU2014-259 and PK2015-1-0001 appeared to be of porcine origin. On the other hand, the two study strains consistently formed distinct clusters for nine of the 11 gene segments (VP4, VP6, VP1-VP3, and NSP2-NSP5), strongly indicating the occurrence of independent porcine-to-human interspecies transmission events. Our observations provide important insights into the origin of zoonotic G4P[6] strains, and into the dynamic interaction between porcine and human rotavirus strains.

Indexed as

AnimalsDiarrheaGenome, ViralHumansPhylogenyRotavirusRotavirus InfectionsSpecies SpecificitySwineSwine DiseasesFull genomic analysisG4P[6] strainsGroup A rotavirusInterspecies transmissionPorcine originThailand

Identifiers

PMID34106412
OpenAlexW3167652552

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.