Evidence map›Paper›PMID 34106310›Full record

ArticleApplied microbiology and biotechnology2021

QTL mapping: an innovative method for investigating the genetic determinism of yeast-bacteria interactions in wine.

Louise Bartle, Emilien Peltier, Joanna F Sundstrom, Krista Sumby, James G Mitchell, Vladimir Jiranek, Philippe Marullo

Abstract read
PubMed Publisher
In one paragraph

Article in Applied microbiology and biotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Louise BartleDepartment of Wine Science, The University of Adelaide, Urrbrae, SA, 5064, Australia. louise.bartle@adelaide.edu.au.ORCID http://orcid.org/0000-0001-7112-1801
Emilien PeltierUniversité de Bordeaux, Unité de recherche Œnologie EA 4577, USC 1366 INRAe, Bordeaux INP, ISVV, Villenave d'Ornon, France.ORCID https://orcid.org/0000-0002-1773-5308
Joanna F SundstromDepartment of Wine Science, The University of Adelaide, Urrbrae, SA, 5064, Australia.ORCID https://orcid.org/0000-0002-4898-3101
Krista SumbyDepartment of Wine Science, The University of Adelaide, Urrbrae, SA, 5064, Australia.ORCID https://orcid.org/0000-0002-1833-2025
James G MitchellCollege of Science and Engineering, Flinders University, Adelaide, SA, Australia.ORCID https://orcid.org/0000-0002-8445-0935
Vladimir JiranekDepartment of Wine Science, The University of Adelaide, Urrbrae, SA, 5064, Australia.ORCID https://orcid.org/0000-0002-9775-8963
Philippe MarulloUniversité de Bordeaux, Unité de recherche Œnologie EA 4577, USC 1366 INRAe, Bordeaux INP, ISVV, Villenave d'Ornon, France. philippe.marullo@u-bordeaux.fr.ORCID https://orcid.org/0000-0002-3594-5173
Australian Research Council · AUCentre National de la Recherche Scientifique · FRFlinders University · AUThe University of Adelaide · AUUniversité de Bordeaux · FR

Funding

Aquitaine Region Sesam ProjectThe Australian Research Council Training Centre for Innovative Wine Production IC170100008Wine Australia AGW Ph 1510Wine Australia UA1707
6 · The paper itself

Abstract

The two most commonly used wine microorganisms, Saccharomyces cerevisiae yeast and Oenococcus oeni bacteria, are responsible for completion of alcoholic and malolactic fermentation (MLF), respectively. For successful co-inoculation, S. cerevisiae and O. oeni must be able to complete fermentation; however, this relies on compatibility between yeast and bacterial strains. For the first time, quantitative trait loci (QTL) analysis was used to elucidate whether S. cerevisiae genetic makeup can play a role in the ability of O. oeni to complete MLF. Assessment of 67 progeny from a hybrid S. cerevisiae strain (SBxGN), co-inoculated with a single O. oeni strain, SB3, revealed a major QTL linked to MLF completion by O. oeni. This QTL encompassed a well-known translocation, XV-t-XVI, that results in increased SSU1 expression and is functionally linked with numerous phenotypes including lag phase duration and sulphite export and production. A reciprocal hemizygosity assay was performed to elucidate the effect of the gene SSU1 in the SBxGN background. Our results revealed a strong effect of SSU1 haploinsufficiency on O. oeni's ability to complete malolactic fermentation during co-inoculation and pave the way for the implementation of QTL mapping projects for deciphering the genetic bases of microbial interactions. KEY POINTS: • For the first time, QTL analysis has been used to study yeast-bacteria interactions. • A QTL encompassing a translocation, XV-t-XVI, was linked to MLF outcomes. • S. cerevisiae SSU1 haploinsufficiency positively impacted MLF by O. oeni.

Indexed as

OenococcusWineFermentationGenetic DeterminismMalatesQuantitative Trait LociSaccharomyces cerevisiaeMalatesMalolactic fermentationQTLSSU1WineYeast-bacteria interactions

Identifiers

PMID34106310
OpenAlexW3171889616

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.