Evidence map›Paper›PMID 34106226›Full record

ArticleDevelopment (Cambridge, England)2021

A patient-based medaka alg2 mutant as a model for hypo-N-glycosylation.

Sevinç Gücüm, Roman Sakson, Marcus Hoffmann, Valerian Grote, Clara Becker, Kaisa Pakari, Lars Beedgen, Christian Thiel, Erdmann Rapp, Thomas Ruppert and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 9 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Frontiers in genetics · 2025
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Sevinç GücümCOS, Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany.ORCID 0000-0002-4604-6114
Roman SaksonHBIGS, Heidelberg Biosciences International Graduate School, Heidelberg University, 69120 Heidelberg, Germany.ORCID 0000-0002-9698-0773
Marcus HoffmannMax Planck Institute for Dynamics of Complex Technical Systems, 39106 Magdeburg, Germany.ORCID 0000-0002-5259-255X
Valerian GroteMax Planck Institute for Dynamics of Complex Technical Systems, 39106 Magdeburg, Germany.
Clara BeckerCOS, Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany.ORCID 0000-0001-7331-1449
Kaisa PakariCOS, Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany.ORCID 0000-0001-8101-5252
Lars BeedgenCenter for Child and Adolescent Medicine, Department Pediatrics I, Heidelberg University, 69120 Heidelberg, Germany.ORCID 0000-0002-3915-6665
Christian ThielCenter for Child and Adolescent Medicine, Department Pediatrics I, Heidelberg University, 69120 Heidelberg, Germany.ORCID 0000-0001-6419-8747
Erdmann RappMax Planck Institute for Dynamics of Complex Technical Systems, 39106 Magdeburg, Germany.ORCID 0000-0001-6618-2626
Thomas RuppertCore facility for Mass Spectrometry and Proteomics, Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany.ORCID 0000-0001-9152-2266
Thomas ThumbergerCOS, Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany.ORCID 0000-0001-8485-457X
Joachim WittbrodtCOS, Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany.ORCID 0000-0001-8550-7377
Heidelberg University · DEMax Planck Institute for Dynamics of Complex Technical Systems · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Defects in the evolutionarily conserved protein-glycosylation machinery during embryonic development are often fatal. Consequently, congenital disorders of glycosylation (CDG) in human are rare. We modelled a putative hypomorphic mutation described in an alpha-1,3/1,6-mannosyltransferase (ALG2) index patient (ALG2-CDG) to address the developmental consequences in the teleost medaka (Oryzias latipes). We observed specific, multisystemic, late-onset phenotypes, closely resembling the patient's syndrome, prominently in the facial skeleton and in neuronal tissue. Molecularly, we detected reduced levels of N-glycans in medaka and in the patient's fibroblasts. This hypo-N-glycosylation prominently affected protein abundance. Proteins of the basic glycosylation and glycoprotein-processing machinery were over-represented in a compensatory response, highlighting the regulatory topology of the network. Proteins of the retinal phototransduction machinery, conversely, were massively under-represented in the alg2 model. These deficiencies relate to a specific failure to maintain rod photoreceptors, resulting in retinitis pigmentosa characterized by the progressive loss of these photoreceptors. Our work has explored only the tip of the iceberg of N-glycosylation-sensitive proteins, the function of which specifically impacts on cells, tissues and organs. Taking advantage of the well-described human mutation has allowed the complex interplay of N-glycosylated proteins and their contribution to development and disease to be addressed.

Indexed as

AnimalsCongenital Disorders of GlycosylationDisease Models, AnimalFibroblastsGlycoproteinsGlycosylationHumansMannosyltransferasesMutationOryziasPhenotypePolysaccharidesRetinitis PigmentosaGlycoproteinsMannosyltransferasesPolysaccharidesCDGDisease modelGlycosylationHuman hypomorphic mutationsMedakaRetinitis pigmentosa

Identifiers

PMID34106226
PMCPMC8217707
OpenAlexW3173052706

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.