Evidence map›Paper›PMID 34105201›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2021

Quantitative proteomics of hamster lung tissues infected with SARS-CoV-2 reveal host factors having implication in the disease pathogenesis and severity.

Voddu Suresh, Varshasnata Mohanty, Kiran Avula, Arup Ghosh, Bharati Singh, Rajendra Kumar Reddy, Deepti Parida, Amol Ratnakar Suryawanshi, Sunil Kumar Raghav, Soma Chattopadhyay and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

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  14. COVID-19 recurrence associated with the virus storage in the Spleen.Revista da Associacao Medica Brasileira (1992) · 2022
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  15. Review
  16. Quantitative proteomics of hamster lung tissues infected with SARS-CoV-2 reveal host factors having implication in the disease pathogenesis and severity.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Voddu SureshInstitute of Life Sciences, Bhubaneswar, India.
Varshasnata MohantyInstitute of Life Sciences, Bhubaneswar, India.
Kiran AvulaInstitute of Life Sciences, Bhubaneswar, India.
Arup GhoshInstitute of Life Sciences, Bhubaneswar, India.
Bharati SinghInstitute of Life Sciences, Bhubaneswar, India.
Rajendra Kumar ReddyInstitute of Life Sciences, Bhubaneswar, India.
Deepti ParidaInstitute of Life Sciences, Bhubaneswar, India.
Amol Ratnakar SuryawanshiInstitute of Life Sciences, Bhubaneswar, India.
Sunil Kumar RaghavInstitute of Life Sciences, Bhubaneswar, India.
Soma ChattopadhyayInstitute of Life Sciences, Bhubaneswar, India.
Punit PrasadInstitute of Life Sciences, Bhubaneswar, India.
Rajeeb Kumar SwainInstitute of Life Sciences, Bhubaneswar, India.
Rupesh DashInstitute of Life Sciences, Bhubaneswar, India.
Ajay ParidaInstitute of Life Sciences, Bhubaneswar, India.
Gulam Hussain SyedInstitute of Life Sciences, Bhubaneswar, India.ORCID https://orcid.org/0000-0001-8540-6162
Shantibhusan SenapatiInstitute of Life Sciences, Bhubaneswar, India.ORCID https://orcid.org/0000-0001-7108-8255
Institute of Life Sciences · INRegional Centre for Biotechnology · IN

Funding

DBT-BIRAC, India BT/CS0004/CS/02/20Wellcome Trust
6 · The paper itself

Abstract

Syrian golden hamsters (Mesocricetus auratus) infected by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) manifests lung pathology. In this study, efforts were made to check the infectivity of a local SARS-CoV-2 isolate in a self-limiting and non-lethal hamster model and evaluate the differential expression of lung proteins during acute infection and convalescence. The findings of this study confirm the infectivity of this isolate in vivo. Analysis of clinical parameters and tissue samples show the pathophysiological manifestation of SARS-CoV-2 infection similar to that reported earlier in COVID-19 patients and hamsters infected with other isolates. However, diffuse alveolar damage (DAD), a common histopathological feature of human COVID-19 was only occasionally noticed. The lung-associated pathological changes were very prominent on the 4th day post-infection (dpi), mostly resolved by 14 dpi. Here, we carried out the quantitative proteomic analysis of the lung tissues from SARS-CoV-2-infected hamsters on day 4 and day 14 post-infection. This resulted in the identification of 1585 proteins of which 68 proteins were significantly altered between both the infected groups. Pathway analysis revealed complement and coagulation cascade, platelet activation, ferroptosis, and focal adhesion as the top enriched pathways. In addition, we also identified altered expression of two pulmonary surfactant-associated proteins (Sftpd and Sftpb), known for their protective role in lung function. Together, these findings will aid in understanding the mechanism(s) involved in SARS-CoV-2 pathogenesis and progression of the disease.

Indexed as

Host-Pathogen InteractionsProteomicsAnimalsCOVID-19CricetinaeDisease Models, AnimalFemaleLungMaleProteomeReproducibility of ResultsSARS-CoV-2Viral LoadProteomeCOVID-19differentially expressed proteinslung proteomemass spectrometryOrbitrappulmonary surfactantSARS-CoV-2

Identifiers

PMID34105201
PMCPMC8206718
OpenAlexW3168167315

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.