Evidence map›Paper›PMID 34103506›Full record

ArticleNature communications2021

Structural basis for SARS-CoV-2 envelope protein recognition of human cell junction protein PALS1.

Jin Chai, Yuanheng Cai, Changxu Pang, Liguo Wang, Sean McSweeney, John Shanklin, Qun Liu

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 1 pooled it
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 1 synthesis or guideline pooled it, 101 citations in OpenAlex.

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8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jin ChaiBiology Department, Brookhaven National Laboratory, Upton, NY, USA.ORCID 0000-0002-4760-5811
Yuanheng CaiBiochemistry and Cell Biology Department, Stony Brook University, Stony Brook, NY, USA.
Changxu PangBiology Department, Brookhaven National Laboratory, Upton, NY, USA.
Liguo WangLaboratory for Biomolecular Structure, Brookhaven National Laboratory, Upton, NY, USA.
Sean McSweeneyNSLS-II, Brookhaven National Laboratory, Upton, NY, USA.
John ShanklinBiology Department, Brookhaven National Laboratory, Upton, NY, USA.
Qun LiuBiology Department, Brookhaven National Laboratory, Upton, NY, USA. qunliu@bnl.gov.ORCID 0000-0002-1179-290X
Brookhaven National Laboratory · USStony Brook University · US

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
NIGMS NIH HHS P30 GM133893
6 · The paper itself

Abstract

The COVID-19 pandemic, caused by the SARS-CoV-2 virus, has created global health and economic emergencies. SARS-CoV-2 viruses promote their own spread and virulence by hijacking human proteins, which occurs through viral protein recognition of human targets. To understand the structural basis for SARS-CoV-2 viral-host protein recognition, here we use cryo-electron microscopy (cryo-EM) to determine a complex structure of the human cell junction protein PALS1 and SARS-CoV-2 viral envelope (E) protein. Our reported structure shows that the E protein C-terminal DLLV motif recognizes a pocket formed exclusively by hydrophobic residues from the PDZ and SH3 domains of PALS1. Our structural analysis provides an explanation for the observation that the viral E protein recruits PALS1 from lung epithelial cell junctions. In addition, our structure provides novel targets for peptide- and small-molecule inhibitors that could block the PALS1-E interactions to reduce E-mediated virulence.

Indexed as

Amino Acid SequenceCoronavirus Envelope ProteinsCryoelectron MicroscopyHumansIntercellular JunctionsMembrane ProteinsNucleoside-Phosphate KinaseProtein DomainsSARS-CoV-2Structural Homology, ProteinStructure-Activity RelationshipCoronavirus Envelope Proteinsenvelope protein, SARS-CoV-2Membrane ProteinsMPP5 protein, humanNucleoside-Phosphate Kinase

Identifiers

PMID34103506
PMCPMC8187709
OpenAlexW3165914225

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.