Evidence map›Paper›PMID 34103090›Full record

SynthesisEuropean journal of medical research2021

Characterization of SARS-CoV-2 different variants and related morbidity and mortality: a systematic review.

SeyedAhmad SeyedAlinaghi, Pegah Mirzapour, Omid Dadras, Zahra Pashaei, Amirali Karimi, Mehrzad MohsseniPour, Mahdi Soleymanzadeh, Alireza Barzegary, Amir Masoud Afsahi, Farzin Vahedi and 5 more

Open access · goldAbstract readSystematic Review
In one paragraph

Synthesis in European journal of medical research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 7 pooled it
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 7 syntheses or guidelines pooled it, 117 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Pooled it
  7. Pooled it
  8. Trial
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Observational
  17. Article
  18. Article
  19. Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 11 institutions in 3 countries.

SeyedAhmad SeyedAlinaghiIranian Research Center for HIV/AIDS, Iranian Institute for Reduction of High Risk Behaviors, Tehran University of Medical Sciences, Tehran, Iran.
Pegah MirzapourIranian Research Center for HIV/AIDS, Iranian Institute for Reduction of High Risk Behaviors, Tehran University of Medical Sciences, Tehran, Iran.
Omid DadrasDepartment of Global Health and Socioepidemiology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Zahra PashaeiChronic Respiratory Disease Research Center, Masih Daneshvari Hospital, Tehran, Iran.
Amirali KarimiSchool of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Mehrzad MohsseniPourIranian Research Center for HIV/AIDS, Iranian Institute for Reduction of High Risk Behaviors, Tehran University of Medical Sciences, Tehran, Iran.
Mahdi SoleymanzadehOphthalmology Resident at Farabi Hospital, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Alireza BarzegarySchool of Medicine, Islamic Azad University, Tehran, Iran.
Amir Masoud AfsahiDepartment of Radiology, School of Medicine, University of California, San Diego, CA, USA.
Farzin VahediSchool of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Ahmadreza ShamsabadiDepartment of Health Information Technology, Esfarayen Faculty of Medical Sciences, Esfarayen, Iran.
Farzane BehnezhadDepartment of Virology, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran.
Solmaz SaeidiDepartment of Nursing, Khalkhal University of Medical Sciences, Khalkhal, Iran.
Esmaeil MehraeenDepartment of Health Information Technology, Khalkhal University of Medical Sciences, 1419733141, Khalkhal, Iran. es.mehraeen@gmail.com.ORCID http://orcid.org/0000-0003-4108-2973
Shayesteh JahanfarDepartment of Public Health and Community Medicine, Tufts University School of Medicine, Boston, MA, USA.
Iranian Institute for Health Sciences Research · IRTehran University of Medical Sciences · IREsfarayen University of Technology · IRFarabi Hospital · IRIran University of Medical Sciences · IRIslamic Azad University, Tehran · IRKyoto University · JPLorestan University of Medical Sciences · IRMasih Daneshvari Hospital · IRTufts University · USUniversity of California San Diego · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionCoronavirus Disease-2019 (SARS-CoV-2) started its devastating trajectory into a global pandemic in Wuhan, China, in December 2019. Ever since, several variants of SARS-CoV-2 have been identified. In the present review, we aimed to characterize the different variants of SARS-CoV-2 and explore the related morbidity and mortality.

methodsA systematic review including the current evidence related to different variants of SARS-CoV-2 and the related morbidity and mortality was conducted through a systematic search utilizing the keywords in the online databases including Scopus, PubMed, Web of Science, and Science Direct; we retrieved all related papers and reports published in English from December 2019 to September 2020.

resultsA review of identified articles has shown three main genomic variants, including type A, type B, and type C. we also identified three clades including S, V, and G. Studies have demonstrated that the C14408T and A23403G alterations in the Nsp12 and S proteins are the most prominent alterations in the world, leading to life-threatening mutations.The spike D614G amino acid change has become the most common variant since December 2019. From missense mutations found from Gujarat SARS-CoV-2 genomes, C28854T, deleterious mutation in the nucleocapsid (N) gene was significantly associated with patients' mortality. The other significant deleterious variant (G25563T) is found in patients located in Orf3a and has a potential role in viral pathogenesis.

conclusionOverall, researchers identified several SARS-CoV-2 variants changing clinical manifestations and increasing the transmissibility, morbidity, and mortality of COVID-19. This should be considered in current practice and interventions to combat the pandemic and prevent related morbidity and mortality.

Indexed as

MutationCoronavirus RNA-Dependent RNA PolymeraseCOVID-19HumansMorbidityPandemicsSARS-CoV-2Spike Glycoprotein, CoronavirusSurvival RateVirulenceCoronavirus RNA-Dependent RNA PolymeraseNSP12 protein, SARS-CoV-2Spike Glycoprotein, Coronavirusspike protein, SARS-CoV-2CharacterizationsCOVID-19Genomic diversitySARS-CoV-2StrainsVariants

Identifiers

PMID34103090
PMCPMC8185313
OpenAlexW3166826605

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.