Evidence map›Paper›PMID 34103011›Full record

ArticleBMC microbiology2021

Structural insights into acyl-ACP selective recognition by the Aeromonas hydrophila AHL synthase AhyI.

Lei Jin, Jingjiao Bao, Yu Chen, Wenge Yang, Wenyi Du

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Lei JinCollege of Food and Pharmaceutical Sciences, Ningbo University, Ningbo, 315211, China.
Jingjiao BaoZhejiang Marine Fisheries Research Institute, Zhoushan, 316021, China.
Yu ChenZhejiang Marine Fisheries Research Institute, Zhoushan, 316021, China.
Wenge YangCollege of Food and Pharmaceutical Sciences, Ningbo University, Ningbo, 315211, China. yangwenge@nbu.edu.cn.
Wenyi DuSichuan MoDe Technology Co., Ltd., Chengdu, 610000, China.
Ningbo University · CNZhejiang Marine Fisheries Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAeromonas hydrophila is a gram-negative bacterium and the major causative agent of the fish disease motile aeromonad septicemia (MAS). It uses N-acyl-homoserine lactone (AHL) quorum sensing signals to coordinate biofilm formation, motility, and virulence gene expression. The AHL signaling pathway is therefore considered to be a therapeutic target against pathogenic A. hydrophila infection. In A. hydrophila, AHL autoinducers biosynthesis are specifically catalyzed by an ACP-dependent AHL synthase AhyI using the precursors SAM and acyl-ACP. Our previously reported AhyI was heterologously expressed in E. coli, which showed the production characteristics of medium-long chain AHLs. This contradicted the prevailing understanding that AhyI was only a short-chain C

resultsIn this study, six linear acyl-ACP proteins with C-terminal his-tags were synthesized in Vibrio harveyi AasS using fatty acids and E. coli produced active holo-ACP proteins, and in vitro biosynthetic assays of six AHL molecules and kinetic studies of recombinant AhyI with a panel of four linear acyl-ACPs were performed. UPLC-MS/MS analyses indicated that AhyI can synthesize short-, medium- and long-chain AHLs from SAM and corresponding linear acyl-ACP substrates. Kinetic parameters measured using a DCPIP colorimetric assay, showed that there was a notable decrease in catalytic efficiency with acyl-chain lengths above C6, and hyperbolic or sigmoidal responses in rate curves were observed for varying acyl-donor substrates. Primary sequence alignment of the six representative AHL synthases offers insights into the structural basis for their specific acyl substrate preference. To further understand the acyl chain length preference of AhyI for linear acyl-ACP, we performed a structural comparison of three ACP-dependent LuxI homologs (TofI, BmaI1 and AhyI) and identified three key hydrophobic residues (I67, F125 and L157) which confer AhyI to selectively recognize native C

conclusionsIn this study, we have redefined AhyI as a multiple short- to long-chain AHL synthase which uses C

Indexed as

Acyl-ButyrolactonesAcyl Carrier ProteinAeromonas hydrophilaBacterial ProteinsKineticsLigasesS-AdenosylmethionineTandem Mass SpectrometryAcyl-ButyrolactonesAcyl Carrier ProteinBacterial ProteinsLigasesN-acylhomoserine lactone synthaseS-AdenosylmethionineAeromonas hydrophilaAhyIBiosynthesisN-acyl-homoserine lactoneNative acyl substratesSelective recognitionStructural basis

Identifiers

PMID34103011
PMCPMC8188788
OpenAlexW3168219674

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.