Evidence map›Paper›PMID 34101729›Full record

ArticlePLoS computational biology2021

Agent-based modeling of the central amygdala and pain using cell-type specific physiological parameters.

Rachael Miller Neilan, Gabrielle Majetic, Mauricio Gil-Silva, Anisha P Adke, Yarimar Carrasquillo, Benedict J Kolber

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  7. Integration of Adenylate Kinase 1 with Its Peptide Conformational Imprint.International journal of molecular sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Rachael Miller NeilanDepartment of Mathematics and Computer Science, Duquesne University, Pittsburgh, Pennsylvania, United States of America.ORCID 0000-0003-4074-0436
Gabrielle MajeticDepartment of Mathematics and Computer Science, Duquesne University, Pittsburgh, Pennsylvania, United States of America.ORCID 0000-0002-5557-7339
Mauricio Gil-SilvaDepartment of Neuroscience and Center for Advanced Pain Studies, University of Texas at Dallas, Richardson, Texas, United States of America.
Anisha P AdkeNational Center for Complementary and Integrative Health, National Institutes of Health, Bethesda, Maryland, United States of America.ORCID 0000-0001-5062-3319
Yarimar CarrasquilloNational Center for Complementary and Integrative Health, National Institutes of Health, Bethesda, Maryland, United States of America.
Benedict J KolberDepartment of Neuroscience and Center for Advanced Pain Studies, University of Texas at Dallas, Richardson, Texas, United States of America.ORCID 0000-0001-8665-1805
Duquesne University · USNational Institutes of Health · USThe University of Texas at Dallas · US

Funding

Molecular and cellular mechanisms of pathological painZIAAT000029 · NCCIH · NATIONAL CENTER FOR COMPLEMENTARY & INTEGRATIVE HEALTH · PI CARRASQUILLO, YARIMAR · 2014 to 2025
$9.7M
Impact of Amygdala Lateralization on Processing and Modulation of Bladder PainR01DK115478 · NIDDK · UNIVERSITY OF TEXAS DALLAS · PI BENEDICT J KOLBER · 2018 to 2026
$4.3M
NIDDK NIH HHS R01 DK115478
6 · The paper itself

Abstract

The amygdala is a brain area involved in emotional regulation and pain. Over the course of the last 20 years, multiple researchers have studied sensory and motor connections within the amygdala in trying to understand the ultimate role of this structure in pain perception and descending control of pain. A number of investigators have been using cell-type specific manipulations to probe the underlying circuitry of the amygdala. As data have accumulated in this research space, we recognized a critical need for a single framework to integrate these data and evaluate emergent system-level responses. In this manuscript, we present an agent-based computational model of two distinct inhibitory neuron populations in the amygdala, those that express protein kinase C delta (PKCδ) and those that express somatostatin (SOM). We utilized a network of neural links to simulate connectivity and the transmission of inhibitory signals between neurons. Type-specific parameters describing the response of these neurons to noxious stimuli were estimated from published physiological and immunological data as well as our own wet-lab experiments. The model outputs an abstract measure of pain, which is calculated in terms of the cumulative pro-nociceptive and anti-nociceptive activity across neurons in both hemispheres of the amygdala. Results demonstrate the ability of the model to produce changes in pain that are consistent with published studies and highlight the importance of several model parameters. In particular, we found that the relative proportion of PKCδ and SOM neurons within each hemisphere is a key parameter in predicting pain and we explored model predictions for three possible values of this parameter. We compared model predictions of pain to data from our earlier behavioral studies and found areas of similarity as well as distinctions between the data sets. These differences, in particular, suggest a number of wet-lab experiments that could be done in the future.

Indexed as

Models, NeurologicalAnimalsCentral Amygdaloid NucleusComputational BiologyDisease Models, AnimalDominance, CerebralElectrophysiological PhenomenaHumansIn Vitro TechniquesMaleMiceNerve NetNeuralgiaNeuronsPainProtein Kinase C-deltaProtein Kinase C-deltaSomatostatin

Identifiers

PMID34101729
PMCPMC8213159
OpenAlexW3166477118

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.