Evidence map›Paper›PMID 34099857›Full record

ArticleCommunications biology2021

LINE-1 transcription in round spermatids is associated with accretion of 5-carboxylcytosine in their open reading frames.

Martin J Blythe, Ayhan Kocer, Alejandro Rubio-Roldan, Tom Giles, Abdulkadir Abakir, Côme Ialy-Radio, Lee M Wheldon, Oxana Bereshchenko, Stefano Bruscoli, Alexander Kondrashov and 9 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Detecting and Mapping N6-Methyladenosine on RNA/DNA Hybrids.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 6 countries.

Martin J BlytheDeep Seq, University of Nottingham, Queen's Medical Centre, Nottingham, UK.
Ayhan KocerGReD Laboratory, CNRS UMR 6293 - INSERM U1103 - Clermont Université, Aubière, France.
Alejandro Rubio-RoldanGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, PTS Granada, Granada, Spain.ORCID 0000-0002-6775-4013
Tom GilesDigital Research Service, Sutton Bonington Campus, University of Nottingham, Sutton Bonington, Leicestershire, UK.
Abdulkadir AbakirSchool of Medicine, University of Nottingham, University Park, Nottingham, UK.ORCID 0000-0001-5043-5529
Côme Ialy-RadioINSERM U1016, Institut Cochin - CNRS UMR8104 - Faculté de Médecine, Université Paris Descartes, Sorbonne Paris Cité, Paris, France.
Lee M WheldonMedical Molecular Sciences, University of Nottingham, University Park, Nottingham, UK.
Oxana BereshchenkoDepartment of Medicine, Section of Pharmacology, University of Perugia, Perugia, Italy.ORCID 0000-0002-2772-6042
Stefano BruscoliDepartment of Medicine, Section of Pharmacology, University of Perugia, Perugia, Italy.ORCID 0000-0003-0313-1615
Alexander KondrashovSchool of Medicine, University of Nottingham, University Park, Nottingham, UK.
Joël R DrevetGReD Laboratory, CNRS UMR 6293 - INSERM U1103 - Clermont Université, Aubière, France.ORCID 0000-0003-3077-6558
Richard D EmesDigital Research Service, Sutton Bonington Campus, University of Nottingham, Sutton Bonington, Leicestershire, UK. richard.emes@nottingham.ac.uk.ORCID 0000-0001-6855-5481
Andrew D JohnsonSchool of Life Sciences, University of Nottingham, University Park, Nottingham, UK.
John R McCarreyUniversity of Texas at San Antonio, San Antonio, TX, USA.ORCID 0000-0002-5784-9318
Daniel GackowskiDepartment of Clinical Biochemistry, Collegium Medicum, Nicolaus Copernicus University, Bydgoszcz, Poland.ORCID 0000-0002-7259-1511
Ryszard OlinskiDepartment of Clinical Biochemistry, Collegium Medicum, Nicolaus Copernicus University, Bydgoszcz, Poland.
Julie CocquetINSERM U1016, Institut Cochin - CNRS UMR8104 - Faculté de Médecine, Université Paris Descartes, Sorbonne Paris Cité, Paris, France.ORCID 0000-0002-6275-5412
Jose L Garcia-PerezGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, PTS Granada, Granada, Spain.ORCID 0000-0002-8132-9849
Alexey RuzovSchool of Medicine, University of Nottingham, University Park, Nottingham, UK. Alexey.Ruzov@nottingham.ac.uk.ORCID 0000-0002-1247-6634
University of Nottingham · GBCentre National de la Recherche Scientifique · FRDélégation Paris 5 · FRNicolaus Copernicus University · PLPfizer-University of Granada-Junta de Andalucía Centre for Genomics and Oncological Research · ESUniversity of Perugia · ITThe University of Texas at San Antonio · US

Funding

Biotechnology and Biological Sciences Research Council BB/N005759/1Medical Research Council MR/L001047/1Medical Research Council MR/N013913/1
6 · The paper itself

Abstract

Chromatin of male and female gametes undergoes a number of reprogramming events during the transition from germ cell to embryonic developmental programs. Although the rearrangement of DNA methylation patterns occurring in the zygote has been extensively characterized, little is known about the dynamics of DNA modifications during spermatid maturation. Here, we demonstrate that the dynamics of 5-carboxylcytosine (5caC) correlate with active transcription of LINE-1 retroelements during murine spermiogenesis. We show that the open reading frames of active and evolutionary young LINE-1s are 5caC-enriched in round spermatids and 5caC is eliminated from LINE-1s and spermiogenesis-specific genes during spermatid maturation, being simultaneously retained at promoters and introns of developmental genes. Our results reveal an association of 5caC with activity of LINE-1 retrotransposons suggesting a potential direct role for this DNA modification in fine regulation of their transcription.

Indexed as

Long Interspersed Nucleotide ElementsOpen Reading FramesAnimalsCytosineMaleMiceSpermatidsSpermatogenesisTranscription, Genetic5-carboxylcytosineCytosine

Identifiers

PMID34099857
PMCPMC8184969
OpenAlexW3171300662

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.