Evidence map›Paper›PMID 34099711›Full record

ArticleNature communications2021

Proline/arginine dipeptide repeat polymers derail protein folding in amyotrophic lateral sclerosis.

Maria Babu, Filippo Favretto, Alain Ibáñez de Opakua, Marija Rankovic, Stefan Becker, Markus Zweckstetter

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
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  6. Interaction of theCells · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Maria BabuGerman Center for Neurodegenerative Diseases (DZNE), Göttingen, Germany.ORCID 0000-0002-5388-0852
Filippo FavrettoGerman Center for Neurodegenerative Diseases (DZNE), Göttingen, Germany.
Alain Ibáñez de OpakuaGerman Center for Neurodegenerative Diseases (DZNE), Göttingen, Germany.
Marija RankovicDepartment for NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Stefan BeckerDepartment for NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. sabe@nmr.mpibpc.mpg.de.ORCID 0000-0003-2041-5740
Markus ZweckstetterGerman Center for Neurodegenerative Diseases (DZNE), Göttingen, Germany. Markus.Zweckstetter@dzne.de.ORCID 0000-0002-2536-6581
German Center for Neurodegenerative Diseases · DEMax Planck Institute for Biophysical Chemistry · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amyotrophic lateral sclerosis and frontotemporal dementia are two neurodegenerative diseases with overlapping clinical features and the pathological hallmark of cytoplasmic deposits of misfolded proteins. The most frequent cause of familial forms of these diseases is a hexanucleotide repeat expansion in the non-coding region of the C9ORF72 gene that is translated into dipeptide repeat polymers. Here we show that proline/arginine repeat polymers derail protein folding by sequestering molecular chaperones. We demonstrate that proline/arginine repeat polymers inhibit the folding catalyst activity of PPIA, an abundant molecular chaperone and prolyl isomerase in the brain that is altered in amyotrophic lateral sclerosis. NMR spectroscopy reveals that proline/arginine repeat polymers bind to the active site of PPIA. X-ray crystallography determines the atomic structure of a proline/arginine repeat polymer in complex with the prolyl isomerase and defines the molecular basis for the specificity of disease-associated proline/arginine polymer interactions. The combined data establish a toxic mechanism that is specific for proline/arginine dipeptide repeat polymers and leads to derailed protein homeostasis in C9orf72-associated neurodegenerative diseases.

Indexed as

Amyotrophic Lateral SclerosisArginineBiopolymersBrainC9orf72 ProteinCatalytic DomainCrystallography, X-RayDipeptidesDNA Repeat ExpansionFrontotemporal DementiaHumansNuclear Magnetic Resonance, BiomolecularPeptidylprolyl IsomeraseProlineProtein AggregatesProtein BindingArginineBiopolymersC9orf72 ProteinC9orf72 protein, humanDipeptidesPeptidylprolyl IsomerasePPIA protein, humanProlineProtein AggregatesRecombinant Proteins

Identifiers

PMID34099711
PMCPMC8184751
OpenAlexW3171751878

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.