Evidence map›Paper›PMID 34098950›Full record

ArticleJournal of biomedical science2021

Identification of COVID-19 B-cell epitopes with phage-displayed peptide library.

Jing-You Guo, I-Ju Liu, Hsiu-Ting Lin, Mei-Jung Wang, Yu-Ling Chang, Shin-Chang Lin, Mei-Ying Liao, Wei-Chia Hsu, Yi-Ling Lin, James C Liao and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Journal of biomedical science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Jing-You Guo *Institute of Biologic Chemistry, Academia Sinica, Taipei, Taiwan.
I-Ju Liu *Institute of Cellular and Organismic Biology, Academia Sinica, No. 128, Academia Road, Section 2, Nangang, Taipei, 11529, Taiwan.
Hsiu-Ting LinInstitute of Cellular and Organismic Biology, Academia Sinica, No. 128, Academia Road, Section 2, Nangang, Taipei, 11529, Taiwan.
Mei-Jung WangInstitute of Cellular and Organismic Biology, Academia Sinica, No. 128, Academia Road, Section 2, Nangang, Taipei, 11529, Taiwan.
Yu-Ling ChangInstitute of Cellular and Organismic Biology, Academia Sinica, No. 128, Academia Road, Section 2, Nangang, Taipei, 11529, Taiwan.
Shin-Chang LinInstitute of Cellular and Organismic Biology, Academia Sinica, No. 128, Academia Road, Section 2, Nangang, Taipei, 11529, Taiwan.
Mei-Ying LiaoInstitute of Cellular and Organismic Biology, Academia Sinica, No. 128, Academia Road, Section 2, Nangang, Taipei, 11529, Taiwan.
Wei-Chia HsuInstitute of Cellular and Organismic Biology, Academia Sinica, No. 128, Academia Road, Section 2, Nangang, Taipei, 11529, Taiwan.
Yi-Ling LinInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
James C LiaoInstitute of Biologic Chemistry, Academia Sinica, Taipei, Taiwan.
Han-Chung WuInstitute of Cellular and Organismic Biology, Academia Sinica, No. 128, Academia Road, Section 2, Nangang, Taipei, 11529, Taiwan. hcw0928@gate.sinica.edu.tw.ORCID http://orcid.org/0000-0002-5185-1169
Institute of Cellular and Organismic Biology, Academia Sinica · TWInstitute of Biological Chemistry, Academia Sinica · TWInstitute of Biomedical Sciences, Academia Sinica · TW

Funding

Academia Sinica AS-SUMMIT-108Ministry of Science and Technology MOST-108-2823-8-001-001Ministry of Science and Technology, Taiwan MOST-108-3114-Y-001-002
6 · The paper itself

Abstract

backgroundCoronavirus disease 19 (COVID-19) first appeared in the city of Wuhan, in the Hubei province of China. Since its emergence, the COVID-19-causing virus, SARS-CoV-2, has been rapidly transmitted around the globe, overwhelming the medical care systems in many countries and leading to more than 3.3 million deaths. Identification of immunological epitopes on the virus would be highly useful for the development of diagnostic tools and vaccines that will be critical to limiting further spread of COVID-19.

methodsTo find disease-specific B-cell epitopes that correspond to or mimic natural epitopes, we used phage display technology to determine the targets of specific antibodies present in the sera of immune-responsive COVID-19 patients. Enzyme-linked immunosorbent assays were further applied to assess competitive antibody binding and serological detection. VaxiJen, BepiPred-2.0 and DiscoTope 2.0 were utilized for B-cell epitope prediction. PyMOL was used for protein structural analysis.

results36 enriched peptides were identified by biopanning with antibodies from two COVID-19 patients; the peptides 4 motifs with consensus residues corresponding to two potential B-cell epitopes on SARS-CoV-2 viral proteins. The putative epitopes and hit peptides were then synthesized for validation by competitive antibody binding and serological detection.

conclusionsThe identified B-cell epitopes on SARS-CoV-2 may aid investigations into COVID-19 pathogenesis and facilitate the development of epitope-based serological diagnostics and vaccines.

Indexed as

COVID-19Epitopes, B-LymphocytePeptide LibrarySARS-CoV-2Viral ProteinsHumansEpitopes, B-LymphocytePeptide LibraryViral ProteinsB-cell epitopeCOVID-19Diagnostic toolPhage-displayed peptidesSARS-CoV-2Serological detection

Identifiers

PMID34098950
PMCPMC8182997
OpenAlexW3167534508

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.