Evidence map›Paper›PMID 34098848›Full record

ArticleBioengineered2021

Utilizing network pharmacology to explore potential mechanisms of YiSui NongJian formula in treating myelodysplastic syndrome.

Lerong Qin, Haiyan Chen, Xiaoqing Ding, Ming Guo, Haiyan Lang, Junxia Liu, Ling Li, Jing Liao, Junyao Liao

Abstract read
In one paragraph

Article in Bioengineered, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Lerong QinDongfang Hospital Affiliated, Beijing, China.
Haiyan ChenDepartment of Hematology, Dongfang Hospital, Beijing University of Chinese Medicine, Beijing, China.
Xiaoqing DingDepartment of Hematology, Dongfang Hospital, Beijing University of Chinese Medicine, Beijing, China.ORCID 0000-0003-2563-4141
Ming GuoDepartment of Hematology, Dongfang Hospital, Beijing University of Chinese Medicine, Beijing, China.
Haiyan LangDepartment of Hematology, Dongfang Hospital, Beijing University of Chinese Medicine, Beijing, China.
Junxia LiuDepartment of Hematology, Dongfang Hospital, Beijing University of Chinese Medicine, Beijing, China.
Ling LiDepartment of Hematology, Dongfang Hospital, Beijing University of Chinese Medicine, Beijing, China.
Jing LiaoDepartment of Hematology, Dongfang Hospital, Beijing University of Chinese Medicine, Beijing, China.
Junyao LiaoDepartment of Hematology, Dongfang Hospital, Beijing University of Chinese Medicine, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study aims to explore potential mechanisms of YiSui NongJian formula (YSNJF) in treating myelodysplastic syndromes (MDS) by network pharmacology-based strategy. Active compounds and corresponding potential therapeutic targets of YSNJF were harvested by utilizing the database of TCMSP (Traditional Chinese Medicine Systems Pharmacology) and BATMAN-TCM (Bioinformatics Analysis Tool for Molecular mechanism of Traditional Chinese Medicine). MDS targets were adopted from GeneCard, KEGG (Kyoto Encyclopedia of Genes and Genomes), TTD (Therapeutic Target Database), DrugBank, and DisGeNet. Then a network of YSNJF- compounds-target-MDS network was harvested. The protein-protein interaction (PPI) network was then generated by the Sting database and subjected to Cytoscape software to harvest major and core targets network by topological analysis. Genes from the core targets network were further subjected to Gene Ontology (GO) and KEGG enrichment analysis to figure out potential targeting pathways. Finally, a compounds-targets-pathways network was generated by Cytoscape. A total of 210 active compounds and 768 corresponding potential therapeutic targets were harvested from ingredients of YSNJF. MDS was shown to have 772 potential treating targets with 98 intersected targets corresponding to 98 active compounds in YSNJF. Topological analysis revealed that 15 targets formed the core PPI network. Further, GO and KEGG enrichment analysis revealed that those core targets were mainly enriched on cell cycle- and immune-related pathways. The present study revealed that therapeutic effects of YSNJF on MDS might be achieved through regulating cell cycle- and immune-related pathways.

Indexed as

Myelodysplastic SyndromesComputational BiologyDatabases, GeneticDrugs, Chinese HerbalHumansProtein Interaction MapsDrugs, Chinese Herbalmyelodysplastic syndromenetwork pharmacologyYiSui nongjian formula

Identifiers

PMID34098848
PMCPMC8806438

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.