Evidence map›Paper›PMID 34098732›Full record

ArticlemBio2021

Analysis of the Oxidative Stress Regulon Identifies

João Anes, Katherine Dever, Athmanya Eshwar, Scott Nguyen, Yu Cao, Sathesh K Sivasankaran, Sandra Sakalauskaitė, Angelika Lehner, Stéphanie Devineau, Rimantas Daugelavičius and 3 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. RfaH contributes to maximal colonization and full virulence of hypervirulentFrontiers in cellular and infection microbiology · 2024
    Article
  11. Article
  12. Characterization of a Tigecycline-Resistant andApplied and environmental microbiology · 2023
    Article
  13. Article
  14. Virulomic Analysis of Multidrug-ResistantAntibiotics (Basel, Switzerland) · 2022
    Article
  15. Article
  16. Bioenergetics and Reactive Nitrogen Species in Bacteria.International journal of molecular sciences · 2022
    Review
  17. Review
  18. Silver Nanoparticles Induce aFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 7 countries.

João AnesUCD-Centre for Food Safety, UCD School of Public Health, Physiotherapy and Sports Science, University College Dublin, Dublin, Ireland.
Katherine DeverUCD-Centre for Food Safety, UCD School of Public Health, Physiotherapy and Sports Science, University College Dublin, Dublin, Ireland.
Athmanya EshwarInstitute for Food Safety and Hygiene, University of Zurich, Zurich, Switzerland.
Scott NguyenUCD-Centre for Food Safety, UCD School of Public Health, Physiotherapy and Sports Science, University College Dublin, Dublin, Ireland.
Yu CaoUCD-Centre for Food Safety, UCD School of Public Health, Physiotherapy and Sports Science, University College Dublin, Dublin, Ireland.
Sathesh K SivasankaranGenome Informatics Facility, Iowa State University, Ames, Iowa, USA.
Sandra SakalauskaitėDepartment of Biochemistry, Faculty of Natural Sciences, Vytautas Magnus University, Kaunas, Lithuania.
Angelika LehnerInstitute for Food Safety and Hygiene, University of Zurich, Zurich, Switzerland.
Stéphanie DevineauUniversité de Paris, BFA, UMR 8251, CNRS, Paris, France.
Rimantas DaugelavičiusDepartment of Biochemistry, Faculty of Natural Sciences, Vytautas Magnus University, Kaunas, Lithuania.
Roger StephanInstitute for Food Safety and Hygiene, University of Zurich, Zurich, Switzerland.
Séamus FanningUCD-Centre for Food Safety, UCD School of Public Health, Physiotherapy and Sports Science, University College Dublin, Dublin, Ireland.
Shabarinath SrikumarUCD-Centre for Food Safety, UCD School of Public Health, Physiotherapy and Sports Science, University College Dublin, Dublin, Ireland.
University College Dublin · IEUniversity of Zurich · CHVytautas Magnus University · LTCentre National de la Recherche Scientifique · FRIowa State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In bacteria, the defense system deployed to counter oxidative stress is orchestrated by three transcriptional factors, SoxS, SoxR, and OxyR. Although the regulon that these factors control is known in many bacteria, similar data are not available for Klebsiella pneumoniae. To address this data gap, oxidative stress was artificially induced in K. pneumoniae MGH78578 using paraquat and the corresponding oxidative stress regulon recorded using transcriptome sequencing (RNA-seq). The

Indexed as

RegulonAnimalsAnti-Bacterial AgentsBacterial ProteinsDrug Resistance, Multiple, BacterialEscherichia coliEscherichia coli ProteinsGene Expression ProfilingGene Expression Regulation, BacterialGenetic Complementation TestHumansKlebsiella InfectionsKlebsiella pneumoniaeOxidative StressTrans-ActivatorsTranscription, GeneticAnti-Bacterial AgentsBacterial ProteinsEscherichia coli ProteinsSoxS protein, E coliTrans-ActivatorsAMRKlebsiella pneumoniaemechanisms of resistanceoxidative stresssoxS

Identifiers

PMID34098732
PMCPMC8262902
OpenAlexW3168792278

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.