Evidence map›Paper›PMID 34098115›Full record

ArticleCellular and molecular gastroenterology and hepatology2021

Wilson Disease: Intersecting DNA Methylation and Histone Acetylation Regulation of Gene Expression in a Mouse Model of Hepatic Copper Accumulation.

Gaurav V Sarode, Kari Neier, Noreene M Shibata, Yuanjun Shen, Dmitry A Goncharov, Elena A Goncharova, Tagreed A Mazi, Nikhil Joshi, Matthew L Settles, Janine M LaSalle and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cellular and molecular gastroenterology and hepatology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

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  13. Wilson Disease: Update on Pathophysiology and Treatment.Frontiers in cell and developmental biology · 2022
    Review
  14. Review
  15. Wilson Disease: Epigenetic Factors Contribute to Genetic Mutations to Affect the Disease.Cellular and molecular gastroenterology and hepatology · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Gaurav V SarodeDivision of Gastroenterology and Hepatology, Davis, California.
Kari NeierDepartment of Medical Microbiology and Immunology, Genome Center, Davis, California.
Noreene M ShibataDivision of Gastroenterology and Hepatology, Davis, California.
Yuanjun ShenDivision of Pulmonary, Critical Care and Sleep Medicine, Lung Center, Department of Internal Medicine, Davis, California.
Dmitry A GoncharovDivision of Pulmonary, Critical Care and Sleep Medicine, Lung Center, Department of Internal Medicine, Davis, California.
Elena A GoncharovaDivision of Pulmonary, Critical Care and Sleep Medicine, Lung Center, Department of Internal Medicine, Davis, California.
Tagreed A MaziDepartment of Nutrition, Davis, California; Department of Community Health Sciences-Clinical Nutrition, College of Applied Medical Sciences, King Saud University, Riyadh, Saudi Arabia.
Nikhil JoshiBioinformatics Core Facility, University of California-Davis, Davis, California.
Matthew L SettlesBioinformatics Core Facility, University of California-Davis, Davis, California.
Janine M LaSalleDepartment of Medical Microbiology and Immunology, Genome Center, Davis, California.
Valentina MediciDivision of Gastroenterology and Hepatology, Davis, California. Electronic address: vmedici@ucdavis.edu.
University of California, Davis · USKing Saud Medical City · SAUniversity of California System · US

Funding

PCB Epigenomic Brain & Behavior Lasting Effects Study (PEBBLES)R01ES029213 · NIEHS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Janine M LaSalle, Pamela J Lein · 2018 to 2026
$6.5M
Mouse Metabolic Phenotyping Center (MMPC) at UC DavisU24DK092993 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LLOYD, KC KENT · 2011 to 2015
$4.1M
TSC2 Signaling in Pulmonary Arterial HypertensionR01HL113178 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GONCHAROVA, ELENA · 2012 to 2021
$3.1M
Neuroimmune interactions in Rett syndromeR01AA027075 · NIAAA · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LASALLE, JANINE M · 2018 to 2022
$2.9M
Epigenetic regulation of Wilson DiseaseR01DK104770 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MEDICI, VALENTINA · 2016 to 2020
$1.8M
6 · The paper itself

Abstract

BACKGROUND &

aimsThe pathogenesis of Wilson disease (WD) involves hepatic and brain copper accumulation resulting from pathogenic variants affecting the ATP7B gene and downstream epigenetic and metabolic mechanisms. Prior methylome investigations in human WD liver and blood and in the Jackson Laboratory (Bar Harbor, ME) C3He-Atp7b

methodsWe investigated class IIa HDAC4 and HDAC5 and H3K9/H3K27 histone acetylation in tx-j mouse livers compared with C3HeB/FeJ (C3H) control in response to 3 treatments: 60% kcal fat diet, D-penicillamine (copper chelator), and choline (methyl group donor). Experiments with copper-loaded hepatoma G2 cells were conducted to validate in vivo studies.

resultsIn 9-week tx-j mice, HDAC5 levels increased significantly after 8 days of a 60% kcal fat diet compared with chow. In 24-week tx-j mice, HDAC4/5 levels were reduced 5- to 10-fold compared with C3H, likely through mechanisms involving HDAC phosphorylation. HDAC4/5 levels were affected by disease progression and accompanied by increased acetylation. D-penicillamine and choline partially restored HDAC4/5 and H3K9ac/H3K27ac to C3H levels. Integrated RNA and chromatin immunoprecipitation sequencing analyses revealed genes regulating energy metabolism and cellular stress/development, which, in turn, were regulated by histone acetylation in tx-j mice compared with C3H mice, with Pparα and Pparγ among the most relevant targets.

conclusionsThese results suggest dietary modulation of class IIa HDAC4/5, and subsequent H3K9/H3K27 acetylation/deacetylation can regulate gene expression in key metabolic pathways in the pathogenesis of WD.

Indexed as

DNA MethylationGene Expression RegulationAcetylationAnimalsCell LineComputational BiologyCopperCopper-Transporting ATPasesDiet, High-FatDisease Models, AnimalDisease SusceptibilityGene Expression ProfilingGenetic Predisposition to DiseaseHepatolenticular DegenerationHistone DeacetylasesHistonesAtp7b protein, mouseCopperCopper-Transporting ATPasesHdac5 protein, mouseHistone DeacetylasesHistonesCopperHistone DeacetylaseLiverMetabolism

Identifiers

PMID34098115
PMCPMC8487080
OpenAlexW3170625032

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.