Evidence map›Paper›PMID 34097796›Full record

ArticleAngewandte Chemie (International ed. in English)2021

Combining High-Throughput Synthesis and High-Throughput Protein Crystallography for Accelerated Hit Identification.

Fandi Sutanto, Shabnam Shaabani, Rick Oerlemans, Deniz Eris, Pravin Patil, Mojgan Hadian, Meitian Wang, May Elizabeth Sharpe, Matthew R Groves, Alexander Dömling

Open access · hybridAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Parallel and High Throughput Reaction Monitoring with Computer Vision.Angewandte Chemie (International ed. in English) · 2025
    Article
  8. Article
  9. Article
  10. Acta pharmaceutica Sinica. B · 2024
    Review
  11. Article
  12. Review
  13. 'Chemistry at the speed of sound': automated 1536-well nanoscale synthesis of 16 scaffolds in parallel.Green chemistry : an international journal and green chemistry resource : GC · 2023
    Article
  14. Access to Isoquinolin-2(1The Journal of organic chemistry · 2022
    Article
  15. Article
  16. Optimization of Covalent MKK7 InhibitorsJournal of medicinal chemistry · 2022
    Article
  17. Article
  18. Fast fragment- and compound-screening pipeline at the Swiss Light Source.Acta crystallographica. Section D, Structural biology · 2022
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Fandi SutantoUniversity of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713, AV, Groningen, The Netherlands.
Shabnam ShaabaniUniversity of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713, AV, Groningen, The Netherlands.ORCID 0000-0001-5546-7140
Rick OerlemansUniversity of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713, AV, Groningen, The Netherlands.
Deniz ErisPhoton Science Division, Paul Scherrer Institute, Switzerland.
Pravin PatilUniversity of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713, AV, Groningen, The Netherlands.
Mojgan HadianUniversity of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713, AV, Groningen, The Netherlands.
Meitian WangPhoton Science Division, Paul Scherrer Institute, Switzerland.
May Elizabeth SharpePhoton Science Division, Paul Scherrer Institute, Switzerland.
Matthew R GrovesUniversity of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713, AV, Groningen, The Netherlands.
Alexander DömlingUniversity of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713, AV, Groningen, The Netherlands.ORCID 0000-0002-9923-8873
University of Groningen · NLPaul Scherrer Institute · CH

Funding

Real-time discovery of inhibitors among billion compounds for preview and downloadR01GM097082 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CAMACHO, CARLOS J. · 2011 to 2020
$2.5M
COFUND ALERT 665250ITN "Accelerated Early stage drug dIScovery" 675555KWF Kankerbestrijding 10504National Institute of Health (NIH) 2R01GM097082-05NIGMS NIH HHS R01 GM097082the European Lead Factory (IMI) 115489the Qatar National Research Foundation NPRP6-065-3-012the Swiss National Science Foundation 4078P0_198290
6 · The paper itself

Abstract

Protein crystallography (PX) is widely used to drive advanced stages of drug optimization or to discover medicinal chemistry starting points by fragment soaking. However, recent progress in PX could allow for a more integrated role into early drug discovery. Here, we demonstrate for the first time the interplay of high throughput synthesis and high throughput PX. We describe a practical multicomponent reaction approach to acrylamides and -esters from diverse building blocks suitable for mmol scale synthesis on 96-well format and on a high-throughput nanoscale format in a highly automated fashion. High-throughput PX of our libraries efficiently yielded potent covalent inhibitors of the main protease of the COVID-19 causing agent, SARS-CoV-2. Our results demonstrate, that the marriage of in situ HT synthesis of (covalent) libraires and HT PX has the potential to accelerate hit finding and to provide meaningful strategies for medicinal chemistry projects.

Indexed as

AcrylamidesAcrylatesCatalytic DomainCoronavirus 3C ProteasesCrystallography, X-RayCysteine Proteinase InhibitorsDrug DiscoveryHigh-Throughput Screening AssaysProtein BindingSARS-CoV-2Small Molecule Libraries3C-like proteinase, SARS-CoV-2AcrylamidesAcrylatesCoronavirus 3C ProteasesCysteine Proteinase InhibitorsSmall Molecule Librariescovalent inhibitorshigh-throughput protein crystallographymulticomponent reactionsnanosynthesisSARS-CoV-2

Identifiers

PMID34097796
PMCPMC8456925
OpenAlexW3168111652

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.