Evidence map›Paper›PMID 34096621›Full record

ArticleThe Journal of pathology2021

Optical mesoscopy, machine learning, and computational microscopy enable high information content diagnostic imaging of blood films.

Michael Shaw, Rémy Claveau, Petru Manescu, Muna Elmi, Biobele J Brown, Ross Scrimgeour, Lisa S Kölln, Gail McConnell, Delmiro Fernandez-Reyes

Open access · hybridAbstract read
In one paragraph

Article in The Journal of pathology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Mesolens imaging in microbiology.Essays in biochemistry · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Michael ShawDepartment of Computer Science, Faculty of Engineering Sciences, University College London, London, UK.
Rémy ClaveauDepartment of Computer Science, Faculty of Engineering Sciences, University College London, London, UK.
Petru ManescuDepartment of Computer Science, Faculty of Engineering Sciences, University College London, London, UK.
Muna ElmiDepartment of Computer Science, Faculty of Engineering Sciences, University College London, London, UK.
Biobele J BrownDepartment of Paediatrics, College of Medicine of University of Ibadan, University College Hospital, Ibadan, Nigeria.
Ross ScrimgeourDepartment of Physics, SUPA, University of Strathclyde, Glasgow, UK.
Lisa S KöllnDepartment of Physics, SUPA, University of Strathclyde, Glasgow, UK.
Gail McConnellDepartment of Physics, SUPA, University of Strathclyde, Glasgow, UK.
Delmiro Fernandez-ReyesDepartment of Computer Science, Faculty of Engineering Sciences, University College London, London, UK.ORCID 0000-0001-5070-9198
Faculty (United Kingdom) · GBUniversity of Strathclyde · GBUniversity of Ibadan · NGNational Physical Laboratory · GB

Funding

IMMIGRATION AND LIVING ARRANGEMENTS OF THE ELDERLYR03AG016559 · NIA · UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS · PI DESAI, SONALDE B. · 1999 to 1999
–
Biotechnology and Biological Sciences Research Council BB/P02565X/1Integrative Biological Imaging Network (IBIN) MR/R025665/1Medical Research Council MR/K015583/1Medical Research Council and Engineering and Physical Sciences Research Council Centre for Doctoral Training in Optical Medical Imaging (Optima) EP/L016559/1UK's Engineering and Physical Sciences Research Council, Global Challenges Research Funds EP/P028608/1Wellcome/EPSRC Centre for Interventional and Surgical Science (Wellcome Trust) 203145Z/16/ZWellcome Trust
6 · The paper itself

Abstract

Automated image-based assessment of blood films has tremendous potential to support clinical haematology within overstretched healthcare systems. To achieve this, efficient and reliable digital capture of the rich diagnostic information contained within a blood film is a critical first step. However, this is often challenging, and in many cases entirely unfeasible, with the microscopes typically used in haematology due to the fundamental trade-off between magnification and spatial resolution. To address this, we investigated three state-of-the-art approaches to microscopic imaging of blood films which leverage recent advances in optical and computational imaging and analysis to increase the information capture capacity of the optical microscope: optical mesoscopy, which uses a giant microscope objective (Mesolens) to enable high-resolution imaging at low magnification; Fourier ptychographic microscopy, a computational imaging method which relies on oblique illumination with a series of LEDs to capture high-resolution information; and deep neural networks which can be trained to increase the quality of low magnification, low resolution images. We compare and contrast the performance of these techniques for blood film imaging for the exemplar case of Giemsa-stained peripheral blood smears. Using computational image analysis and shape-based object classification, we demonstrate their use for automated analysis of red blood cell morphology and visualization and detection of small blood-borne parasites such as the malarial parasite Plasmodium falciparum. Our results demonstrate that these new methods greatly increase the information capturing capacity of the light microscope, with transformative potential for haematology and more generally across digital pathology. © 2021 The Authors. The Journal of Pathology published by John Wiley & Sons, Ltd. on behalf of The Pathological Society of Great Britain and Ireland.

Indexed as

Machine LearningBloodDiagnostic ImagingHumansMicroscopydiagnostic imagingerythrocyte counthaematologic testslight microscopymalaria, falciparumsupervised machine learning

Identifiers

PMID34096621
PMCPMC12086746
OpenAlexW3173101725

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.