Evidence map›Paper›PMID 34096288›Full record

ArticleJournal of the American Society for Mass Spectrometry2021

Investigation of the Experimental Parameters of Ultraviolet Photodissociation for the Structural Characterization of Chondroitin Sulfate Glycosaminoglycan Isomers.

Lauren E Pepi, Franklin E Leach, Dustin R Klein, Jennifer S Brodbelt, I Jonathan Amster

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Chemical science · 2023
    Article
  3. Isolation and Compositional Analysis of Glycosaminoglycans.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Lauren E PepiDepartment of Chemistry, University of Georgia, Athens, Georgia 30602, United States.ORCID https://orcid.org/0000-0002-5740-4175
Franklin E LeachDepartment of Chemistry, University of Georgia, Athens, Georgia 30602, United States.ORCID https://orcid.org/0000-0002-3292-1096
Dustin R KleinDepartment of Biochemistry and Mass Spectrometry Research Center, Vanderbilt University, Nashville, Tennessee 37232, United States.ORCID https://orcid.org/0000-0001-7327-6479
Jennifer S BrodbeltDepartment of Chemistry, University of Texas at Austin, Austin, Texas 78712, United States.ORCID https://orcid.org/0000-0003-3207-0217
I Jonathan AmsterDepartment of Chemistry, University of Georgia, Athens, Georgia 30602, United States.ORCID https://orcid.org/0000-0001-7523-5144
University of Georgia · USThe University of Texas at Austin · USVanderbilt University · US

Funding

TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
Ultraviolet Photodissociation Mass Spectrometry for Characterization of Biological MoleculesR35GM139658 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S. · 2021 to 2025
$2.9M
UVPD-MS Characterization of LipopolysaccharidesR01GM103655 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S. · 2012 to 2019
$2.3M
An Automated Platform for the CE-MS Analysis of GlycosaminoglycansU01CA231074 · NCI · UNIVERSITY OF GEORGIA · PI AMSTER, I JONATHAN · 2018 to 2020
$895k
Rapid Sequencing of Sulfated Glycans By CE-MS/MSR21HL136271 · NHLBI · UNIVERSITY OF GEORGIA · PI AMSTER, I JONATHAN · 2016 to 2017
$611k
NCI NIH HHS U01 CA231074NHLBI NIH HHS R21 HL136271NIGMS NIH HHS P41 GM103390NIGMS NIH HHS R01 GM103655NIGMS NIH HHS R35 GM139658
6 · The paper itself

Abstract

Glycosaminoglycans (GAGs) are linear polysaccharides that participate in a broad range of biological functions. Their incomplete biosynthesis pathway leads to nonuniform chains and complex mixtures. For this reason, the characterization of GAGs has been a difficult hurdle for the analytical community. Recently, ultraviolet photodissociation (UVPD) has emerged as a useful tool for determining sites of modification within a GAG chain. Here, we investigate the ability for UVPD to distinguish chondroitin sulfate epimers and the effects of UVPD experimental parameters on fragmentation efficiency. Chondroitin sulfate A (CS-A) and chondroitin sulfate B (CS-B), commonly referred to as dermatan sulfate (DS), differ only in C-5 uronic acid stereochemistry. This uronic acid difference can influence GAG-protein binding and therefore can alter the specific biological function of a GAG chain. Prior tandem mass spectrometry methods investigated for the elucidation of GAG structures also have difficulty differentiating 4-

Indexed as

carbohydratesglycansion activationtandem mass spectrometryUVPD

Identifiers

PMID34096288
PMCPMC8377745
OpenAlexW3170654570

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.