Evidence map›Paper›PMID 34095506›Full record

ArticleWellcome open research2021

SARS-CoV-2 detection by a clinical diagnostic RT-LAMP assay.

Michael D Buck, Enzo Z Poirier, Ana Cardoso, Bruno Frederico, Johnathan Canton, Sam Barrell, Rupert Beale, Richard Byrne, Simon Caidan, Margaret Crawford and 30 more

Open access · goldAbstract read
In one paragraph

Article in Wellcome open research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
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  12. Novel coronavirus disease (COVID-19) pandemic: A recent mini review.Computational and structural biotechnology journal · 2021
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors at 6 institutions in 2 countries.

Michael D Buck *The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0002-9611-1199
Enzo Z Poirier *The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0001-9795-2144
Ana CardosoThe Francis Crick Institute, London, NW1 1AT, UK.
Bruno FredericoThe Francis Crick Institute, London, NW1 1AT, UK.
Johnathan CantonThe Francis Crick Institute, London, NW1 1AT, UK.
Sam BarrellThe Francis Crick Institute, London, NW1 1AT, UK.
Rupert BealeThe Francis Crick Institute, London, NW1 1AT, UK.
Richard ByrneThe Francis Crick Institute, London, NW1 1AT, UK.
Simon CaidanThe Francis Crick Institute, London, NW1 1AT, UK.
Margaret CrawfordThe Francis Crick Institute, London, NW1 1AT, UK.
Laura CubittThe Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0003-1948-6795
Sonia GandhiThe Francis Crick Institute, London, NW1 1AT, UK.
Robert GoldstoneThe Francis Crick Institute, London, NW1 1AT, UK.
Paul R GrantHealh Service Laboratories, London, WC1H 9AX, UK.
Kiran GulatiNew England Biolabs, Ipswich, MA, USA.
Steve HindmarshThe Francis Crick Institute, London, NW1 1AT, UK.
Michael HowellThe Francis Crick Institute, London, NW1 1AT, UK.
Michael HubankThe Royal Marsden Hospital, Sutton, SM2 5NG, UK.
Rachael InstrellThe Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0002-4437-2952
Ming JiangThe Francis Crick Institute, London, NW1 1AT, UK.
George KassiotisThe Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0002-8457-2633
Wei-Ting LuThe Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0002-1405-4806
James I MacRaeThe Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0002-1464-8583
Iana MartiniThe Royal Free Hospital, London, NW3 2QG, UK.
Davin MillerNew England Biolabs, Ipswich, MA, USA.
David MooreUniversity College London, London, WC1E 6BT, UK.
Eleni NastouliThe Francis Crick Institute, London, NW1 1AT, UK.
Jerome NicodThe Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0003-2459-3480
Luke NightingaleThe Francis Crick Institute, London, NW1 1AT, UK.
Jessica OlsenThe Francis Crick Institute, London, NW1 1AT, UK.
Amin OomatiaThe Royal Free Hospital, London, NW3 2QG, UK.
Nicola O'ReillyThe Francis Crick Institute, London, NW1 1AT, UK.
Anett RidegThe Francis Crick Institute, London, NW1 1AT, UK.
Ok-Ryul SongThe Francis Crick Institute, London, NW1 1AT, UK.
Amy StrangeThe Francis Crick Institute, London, NW1 1AT, UK.
Charles SwantonThe Francis Crick Institute, London, NW1 1AT, UK.
Samra TurajlicThe Francis Crick Institute, London, NW1 1AT, UK.
Mary WuThe Francis Crick Institute, London, NW1 1AT, UK.
Caetano Reis e SousaThe Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0001-7392-2119
Crick COVID-19 Consortium
The Francis Crick Institute · GBUniversity College London Hospitals NHS Foundation Trust · GBNew England Biolabs (United States) · USThe Royal Free Hospital · GBInstitute of Cancer Research · GBRoyal Marsden NHS Foundation Trust · GB

Funding

Cancer Research UK 29911Wellcome Trust FC001078Wellcome Trust FC001136Wellcome Trust FC001169
6 · The paper itself

Abstract

The ongoing pandemic of SARS-CoV-2 calls for rapid and cost-effective methods to accurately identify infected individuals. The vast majority of patient samples is assessed for viral RNA presence by RT-qPCR. Our biomedical research institute, in collaboration between partner hospitals and an accredited clinical diagnostic laboratory, established a diagnostic testing pipeline that has reported on more than 252,000 RT-qPCR results since its commencement at the beginning of April 2020. However, due to ongoing demand and competition for critical resources, alternative testing strategies were sought. In this work, we present a clinically-validated procedure for high-throughput SARS-CoV-2 detection by RT-LAMP that is robust, reliable, repeatable, specific, and inexpensive.

Indexed as

clinical diagnosticRT-LAMPSARS-CoV-2

Identifiers

PMID34095506
PMCPMC8170534
OpenAlexW3122968958

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.