Evidence map›Paper›PMID 34095338›Full record

ArticleOpen forum infectious diseases2021

Delayed Rise of Oral Fluid Antibodies, Elevated BMI, and Absence of Early Fever Correlate With Longer Time to SARS-CoV-2 RNA Clearance in a Longitudinally Sampled Cohort of COVID-19 Outpatients.

Annukka A R Antar, Tong Yu, Nora Pisanic, Razvan Azamfirei, Jeffrey A Tornheim, Diane M Brown, Kate Kruczynski, Justin P Hardick, Thelio Sewell, Minyoung Jang and 34 more

Open access · goldAbstract read
In one paragraph

Article in Open forum infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  4. CROI 2024: Acute and Post-Acute COVID-19.Topics in antiviral medicine · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

44 authors at 1 institution in 1 country.

Annukka A R AntarDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID https://orcid.org/0000-0002-6775-1103
Tong YuDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Nora PisanicDepartment of Environmental Health and Engineering, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Razvan AzamfireiDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Jeffrey A TornheimDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Diane M BrownDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Kate KruczynskiDepartment of Environmental Health and Engineering, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Justin P HardickDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Thelio SewellDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Minyoung JangDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Taylor ChurchDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Samantha N WalchDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Carolyn ReulandDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Vismaya S BachuDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Kirsten LittlefieldW. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Han-Sol ParkW. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Rebecca L UrsinDepartment of Biochemistry and Molecular Biology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Abhinaya GanesanW. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Oyinkansola KusemijuDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Brittany BarnabaDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Curtisha CharlesDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Michelle PrizziDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Jaylynn R JohnstoneDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Christine PaytonDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Weiwei DaiDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Joelle FuchsDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Guido MassaccesiDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Derek T ArmstrongDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Jennifer L TownsendDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Sara C KellerDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Zoe O DemkoDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID https://orcid.org/0000-0003-2122-820X
Chen HuDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Mei-Cheng WangDepartment of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Lauren M SauerDepartment of Emergency Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Heba H MostafaDepartment of Biochemistry and Molecular Biology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Jeanne C KerulyDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Shruti H MehtaDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Sabra L KleinW. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Andrea L CoxDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Andrew PekoszW. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.ORCID https://orcid.org/0000-0003-3248-1761
Christopher D HeaneyDepartment of Environmental Health and Engineering, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
David L ThomasDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Paul W BlairDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Yukari C ManabeDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Johns Hopkins University · US

Funding

ECHODAC (Environmental Influences on Child Health Outcomes Data Analysis Center)U24OD023382 · OD · JOHNS HOPKINS UNIVERSITY · PI Diane J Catellier, LISA P JACOBSON · 2016 to 2026
$148.4M
The Center for Advancing Point of Care in Heart, Lung, Blood and Sleep DiseasesU54HL143541 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BRYAN O BUCHHOLZ, Nathaniel Scott Hafer · 2018 to 2026
$141.0M
LC: HIV Prevention Trials Network - Laboratory Support for the SARS-CoV-2 Seroprevalence Study (CoVPN 5002)UM1AI068613 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SUSAN H ESHLEMAN, Mark A Marzinke · 2011 to 2026
$100.2M
Vaccine Response and Immunotherapeutics SWGP30AI094189 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Anna Palmer Durbin · 2012 to 2026
$67.0M
TrainingU54EB007958 · NIBIB · JOHNS HOPKINS UNIVERSITY · PI Matthew Hamill · 2007 to 2026
$34.6M
TRAINING IN AREAS FUNDAMENTAL TO CANCER RESEARCHT32CA009110 · NCI · JOHNS HOPKINS UNIVERSITY · PI MATUNIS, MICHAEL J., WEERARATNA, ASHANI T · 1985 to 2025
$13.1M
Virology Resource CoreU54CA260492 · NCI · JOHNS HOPKINS UNIVERSITY · PI KLEIN, SABRA L. · 2020 to 2024
$10.4M
Antimicrobial resistant E. coli before and after California Senate bill 27 (ARES): a natural experimentR01AI130066 · NIAID · KAISER FOUNDATION RESEARCH INSTITUTE · PI TARTOF, SARA · 2017 to 2021
$3.8M
Arsenic and immune response to influenza vaccination in pregnant women and newbornsR01ES026973 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI HEANEY, CHRISTOPHER D, LABRIQUE, ALAIN BERNARD · 2017 to 2021
$3.6M
The HIV Latent Reservoir, Suboptimal Immune Response on Antiretroviral Therapy, and Exogenous Cytokine TherapiesK08AI143391 · NIAID · JOHNS HOPKINS UNIVERSITY · PI ANTAR, ANNUKKA AIDA ROSE · 2019 to 2023
$994k
Whole Genome Sequencing of Drug Resistant Tuberculosis in India: Genotype-Phenotype Correlation, Clinical Impact of Resistance, and Sequencing Directly from SputumK23AI135102 · NIAID · JOHNS HOPKINS UNIVERSITY · PI TORNHEIM, JEFFREY · 2018 to 2021
$776k
LONGITUDINAL STUDY OF DEPRESSION IN LUNG CANCERR01NR005228 · NINR · UNIVERSITY OF SOUTH FLORIDA · PI WEITZNER, MICHAEL A · 1999 to 2002
$550k
AHRQ HHS K08 HS025782NCI NIH HHS T32 CA009110NCI NIH HHS U54 CA260492NHLBI NIH HHS U54 HL143541NIAID NIH HHS HHSN272201400007CNIAID NIH HHS K08 AI143391NIAID NIH HHS K23 AI135102NIAID NIH HHS P30 AI094189NIAID NIH HHS R01 AI130066NIAID NIH HHS R21 AI139784NIAID NIH HHS UM1 AI068613NIBIB NIH HHS U54 EB007958NIEHS NIH HHS R01 ES026973NIH HHS U24 OD023382NINR NIH HHS R01 NR005228
6 · The paper itself

Abstract

backgroundSustained molecular detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA in the upper respiratory tract (URT) in mild to moderate coronavirus disease 2019 (COVID-19) is common. We sought to identify host and immune determinants of prolonged SARS-CoV-2 RNA detection.

methodsNinety-five symptomatic outpatients self-collected midturbinate nasal, oropharyngeal (OP), and gingival crevicular fluid (oral fluid) samples at home and in a research clinic a median of 6 times over 1-3 months. Samples were tested for viral RNA, virus culture, and SARS-CoV-2 and other human coronavirus antibodies, and associations were estimated using Cox proportional hazards models.

resultsViral RNA clearance, as measured by SARS-CoV-2 reverse transcription polymerase chain reaction (RT-PCR), in 507 URT samples occurred a median (interquartile range) 33.5 (17-63.5) days post-symptom onset. Sixteen nasal-OP samples collected 2-11 days post-symptom onset were virus culture positive out of 183 RT-PCR-positive samples tested. All participants but 1 with positive virus culture were negative for concomitant oral fluid anti-SARS-CoV-2 antibodies. The mean time to first antibody detection in oral fluid was 8-13 days post-symptom onset. A longer time to first detection of oral fluid anti-SARS-CoV-2 S antibodies (adjusted hazard ratio [aHR], 0.96; 95% CI, 0.92-0.99;

conclusionsWe demonstrate that delayed rise of oral fluid SARS-CoV-2-specific antibodies, elevated BMI, and absence of early fever are independently associated with delayed URT viral RNA clearance.

Indexed as

antibodyCOVID-19RT-PCRSARS-CoV-2viral RNA

Identifiers

PMID34095338
PMCPMC8083254
OpenAlexW3171946601

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.