Evidence map›Paper›PMID 34094307›Full record

ArticleChemical science2020

Glycoside hydrolase stabilization of transition state charge: new directions for inhibitor design.

Weiwu Ren, Marco Farren-Dai, Natalia Sannikova, Katarzyna Świderek, Yang Wang, Oluwafemi Akintola, Robert Britton, Vicent Moliner, Andrew J Bennet

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Weiwu RenDepartment of Chemistry, Simon Fraser University Burnaby British Columbia V5A 1S6 Canada bennet@sfu.ca rbritton@sfu.ca +1-778-782-8814.ORCID https://orcid.org/0000-0002-9485-1679
Marco Farren-DaiDepartment of Chemistry, Simon Fraser University Burnaby British Columbia V5A 1S6 Canada bennet@sfu.ca rbritton@sfu.ca +1-778-782-8814.
Natalia SannikovaDepartment of Chemistry, Simon Fraser University Burnaby British Columbia V5A 1S6 Canada bennet@sfu.ca rbritton@sfu.ca +1-778-782-8814.ORCID https://orcid.org/0000-0003-3687-903X
Katarzyna ŚwiderekDepartament de Química Física i Analítica, Universitat Jaume I 12560 Castellón Spain moliner@uji.es.ORCID https://orcid.org/0000-0002-7528-1551
Yang WangDepartment of Chemistry, Simon Fraser University Burnaby British Columbia V5A 1S6 Canada bennet@sfu.ca rbritton@sfu.ca +1-778-782-8814.ORCID https://orcid.org/0000-0003-2054-9394
Oluwafemi AkintolaDepartment of Chemistry, Simon Fraser University Burnaby British Columbia V5A 1S6 Canada bennet@sfu.ca rbritton@sfu.ca +1-778-782-8814.ORCID https://orcid.org/0000-0001-9790-7132
Robert BrittonDepartment of Chemistry, Simon Fraser University Burnaby British Columbia V5A 1S6 Canada bennet@sfu.ca rbritton@sfu.ca +1-778-782-8814.ORCID https://orcid.org/0000-0002-9335-0047
Vicent MolinerDepartament de Química Física i Analítica, Universitat Jaume I 12560 Castellón Spain moliner@uji.es.ORCID https://orcid.org/0000-0002-3665-3391
Andrew J BennetDepartment of Chemistry, Simon Fraser University Burnaby British Columbia V5A 1S6 Canada bennet@sfu.ca rbritton@sfu.ca +1-778-782-8814.ORCID https://orcid.org/0000-0002-8378-6752
Simon Fraser University · CAUniversitat Jaume I · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carbasugars are structural mimics of naturally occurring carbohydrates that can interact with and inhibit enzymes involved in carbohydrate processing. In particular, carbasugars have attracted attention as inhibitors of glycoside hydrolases (GHs) and as therapeutic leads in several disease areas. However, it is unclear how the carbasugars are recognized and processed by GHs. Here, we report the synthesis of three carbasugar isotopologues and provide a detailed transition state (TS) analysis for the formation of the initial GH-carbasugar covalent intermediate, as well as for hydrolysis of this intermediate, using a combination of experimentally measured kinetic isotope effects and hybrid QM/MM calculations. We find that the α-galactosidase from

Identifiers

PMID34094307
PMCPMC8162432
OpenAlexW3086609578

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.