Evidence map›Paper›PMID 34092617›Full record

ArticleCancer biomarkers : section A of Disease markers2021

Progressive alteration of DNA methylation of Alu, MGMT, MINT2, and TFPI2 genes in colonic mucosa during colorectal cancer development.

Ben Kang, Hyun Seok Lee, Seong Woo Jeon, Soo Yeun Park, Gyu Seog Choi, Won Kee Lee, Somi Heo, Duk Hee Lee, Dong Sun Kim

Abstract read
In one paragraph

Article in Cancer biomarkers : section A of Disease markers, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Ben KangDepartment of Pediatrics and Bio-medical Research Institute, Kyungpook National University, Dongin-dong, Jung-gu, Daegu, Korea.
Hyun Seok LeeDepartment of Internal Medicine, Kyungpook National University, Dongin-dong, Jung-gu, Daegu, Korea.
Seong Woo JeonDepartment of Internal Medicine, Kyungpook National University, Dongin-dong, Jung-gu, Daegu, Korea.
Soo Yeun ParkDepartment of General Surgery, Kyungpook National University, Dongin-dong, Jung-gu, Daegu, Korea.
Gyu Seog ChoiDepartment of General Surgery, Kyungpook National University, Dongin-dong, Jung-gu, Daegu, Korea.
Won Kee LeeDepartment of Preventive Medicine, Kyungpook National University, Dongin-dong, Jung-gu, Daegu, Korea.
Somi HeoDepartment of Preventive Medicine, Kyungpook National University, Dongin-dong, Jung-gu, Daegu, Korea.
Duk Hee LeeDepartment of Preventive Medicine, Kyungpook National University, Dongin-dong, Jung-gu, Daegu, Korea.
Dong Sun KimDepartment of Anatomy, School of Medicine, Kyungpook National University, Dongin-dong, Jung-gu, Daegu, Korea.
Kyungpook National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundColorectal cancer (CRC) is one of the leading causes of mortality and morbidity in the world. It is characterized by different pathways of carcinogenesis and is a heterogeneous disease with diverse molecular landscapes that reflect histopathological and clinical information. Changes in the DNA methylation status of colon epithelial cells have been identified as critical components in CRC development and appear to be emerging biomarkers for the early detection and prognosis of CRC.

objectiveTo explore the underlying disease mechanisms and identify more effective biomarkers of CRC.

methodsWe compared the levels and frequencies of DNA methylation in 11 genes (Alu, APC, DAPK, MGMT, MLH1, MINT1, MINT2, MINT31, p16, RGS6, and TFPI2) in colorectal cancer and its precursor adenomatous polyp with normal tissue of healthy subjects using pyrosequencing and then evaluated the clinical value of these genes.

resultsAberrant methylation of Alu, MGMT, MINT2, and TFPI2 genes was progressively accumulated during the normal-adenoma-carcinoma progression. Additionally, CGI methylation occurred either as an adenoma-associated event for APC, MLH1, MINT1, MINT31, p16, and RGS6 or a tumor-associated event for DAPK. Moreover, relatively high levels and frequencies of DAPK, MGMT, and TFPI2 methylation were detected in the peritumoral nonmalignant mucosa of cancer patients in a field-cancerization manner, as compared to normal mucosa from healthy subjects.

conclusionThis study identified several biomarkers associated with the initiation and progression of CRC. As novel findings, they may have important clinical implications for CRC diagnostic and prognostic applications. Further large-scale studies are needed to confirm these findings.

Indexed as

Adenomatous PolypsAlu ElementsBiomarkers, TumorBiopsyCadherinsCarcinogenesisCase-Control StudiesColonColonoscopyColorectal NeoplasmsDisease ProgressionDNA MethylationDNA Modification MethylasesDNA Repair EnzymesEarly Detection of CancerGlycoproteinsAPBA2 protein, humanBiomarkers, TumorCadherinsDNA Modification MethylasesDNA Repair EnzymesGlycoproteinsMGMT protein, humanNerve Tissue Proteinstissue-factor-pathway inhibitor 2Tumor Suppressor ProteinsbiomarkersColon mucosaDNA methylationnormal-adenoma-carcinomapyrosequencing

Identifiers

PMID34092617
PMCPMC12500052
OpenAlexW3170289153

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.