Evidence map›Paper›PMID 34089406›Full record

ArticleRice (New York, N.Y.)2021

A Single Nucleotide Substitution of GSAM Gene Causes Massive Accumulation of Glutamate 1-Semialdehyde and Yellow Leaf Phenotype in Rice.

Qian Wang, Baiyang Zhu, Congping Chen, Zhaodi Yuan, Jia Guo, Xiaorong Yang, San Wang, Yan Lv, Qingsong Liu, Bin Yang and 3 more

Open access · goldAbstract read
In one paragraph

Article in Rice (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular Response ofBiology · 2022
    Article
  4. An alanine to valine mutation of glutamyl-tRNA reductase enhances 5-aminolevulinic acid synthesis in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Qian Wang *State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, 611130, China.
Baiyang Zhu *Rice Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Congping ChenRice Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Zhaodi YuanRice Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Jia GuoRice Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Xiaorong YangRice Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
San WangRice Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Yan LvRice Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Qingsong LiuRice Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Bin YangRice Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Changhui SunState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, 611130, China.
Pingrong WangState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, 611130, China. prwang@sicau.edu.cn.
Xiaojian DengState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, 611130, China. xjdeng@sicau.edu.cn.ORCID http://orcid.org/0000-0002-0548-0889
Sichuan Agricultural University · CN

Funding

National Key Research and Development Program of China 2017YFD0100201National Natural Science Foundation of China 31971869
6 · The paper itself

Abstract

backgroundTetrapyrroles play indispensable roles in various biological processes. In higher plants, glutamate 1-semialdehyde 2,1-aminomutase (GSAM) converts glutamate 1-semialdehyde (GSA) to 5-aminolevulinic acid (ALA), which is the rate-limiting step of tetrapyrrole biosynthesis. Up to now, GSAM genes have been successively identified from many species. Besides, it was found that GSAM could form a dimeric protein with itself by x-ray crystallography. However, no mutant of GSAM has been identified in monocotyledonous plants, and no experiment on interaction of GSAM protein with itself has been reported so far.

resultWe isolated a yellow leaf mutant, ys53, in rice (Oryza sativa). The mutant showed decreased photosynthetic pigment contents, suppressed chloroplast development, and reduced photosynthetic capacity. In consequence, its major agronomic traits were significantly affected. Map-based cloning revealed that the candidate gene was LOC_Os08g41990 encoding GSAM protein. In ys53 mutant, a single nucleotide substitution in this gene caused an amino acid change in the encoded protein, so its ALA-synthesis ability was significantly reduced and GSA was massively accumulated. Complementation assays suggested the mutant phenotype of ys53 could be rescued by introducing wild-type OsGSAM gene, confirming that the point mutation in OsGSAM is the cause of the mutant phenotype. OsGSAM is mainly expressed in green tissues, and its encoded protein is localized to chloroplast. qRT-PCR analysis indicated that the mutation of OsGSAM not only affected the expressions of tetrapyrrole biosynthetic genes, but also influenced those of photosynthetic genes in rice. In addition, the yeast two-hybrid experiment showed that OsGSAM protein could interact with itself, which could largely depend on the two specific regions containing the 81th-160th and the 321th-400th amino acid residues at its N- and C-terminals, respectively.

conclusionsWe successfully characterized rice GSAM gene by a yellow leaf mutant and map-based cloning approach. Meanwhile, we verified that OsGSAM protein could interact with itself mainly by means of the two specific regions of amino acid residues at its N- and C-terminals, respectively.

Indexed as

Chloroplast developmentGene cloningGSAM geneProtein interactionRiceTetrapyrrol biosynthesisYellow leaf mutant

Identifiers

PMID34089406
PMCPMC8179877
OpenAlexW3165803832

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.