Evidence map›Paper›PMID 34089008›Full record

ReviewNature reviews. Microbiology2021

A lasting symbiosis: how Vibrio fischeri finds a squid partner and persists within its natural host.

Karen L Visick, Eric V Stabb, Edward G Ruby

Open access · greenAbstract readReview
In one paragraph

Review in Nature reviews. Microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 137 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Genomic and physiological characterization of Aliivibrio sp. REG001485: A specialized functional ecotype for long-term bioluminescent signaling.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2026
    Article
  10. Article
  11. SypC, a symbiont outer membrane vesicle protein, impacts the development of the squid-vibrio partnership.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  12. Article
  13. Article
  14. Maintaining microbiota across diverse symbiotic organs inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  15. TheMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  16. Article
  17. Wild rice-associatedmSystems · 2025
    Article
  18. Review
  19. Positive Microbiology in the Movies.Microbial biotechnology · 2025
    Review
  20. Applied and environmental microbiology · 2025
    Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Karen L Visick *Department of Microbiology and Immunology, Loyola University Chicago, Maywood, IL, USA. kvisick@luc.edu.
Eric V Stabb *Department of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA. estabb@uic.edu.
Edward G RubyPacific Biosciences Research Center, Kewalo Marine Laboratory, University of Hawai'i at Manoa, Honolulu, HI, USA. eruby@hawaii.edu.ORCID http://orcid.org/0000-0002-4112-4830
Loyola University Chicago · USUniversity of Hawaiʻi at Mānoa · USUniversity of Illinois Chicago · US

Funding

Vibrio fischeri as a Model for Bacterial ColonizationR37AI050661 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI MARGARET J MC FALL-NGAI, Edward G Ruby · 2018 to 2026
$5.4M
Vibrio Virulence Determinants in a Benign ColonizationR01OD011024 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2012 to 2020
$3.9M
Host-associated biofilm formation and dispersal mechanismsR35GM130355 · NIGMS · LOYOLA UNIVERSITY CHICAGO · PI Karen L Visick · 2019 to 2026
$3.5M
Vibrio colonization determinants in symbiosisR01GM135254 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2020 to 2023
$1.9M
NIAID NIH HHS R37 AI050661NIGMS NIH HHS R01 GM135254NIGMS NIH HHS R35 GM130355NIH HHS R01 OD011024
6 · The paper itself

Abstract

As our understanding of the human microbiome progresses, so does the need for natural experimental animal models that promote a mechanistic understanding of beneficial microorganism-host interactions. Years of research into the exclusive symbiosis between the Hawaiian bobtail squid, Euprymna scolopes, and the bioluminescent bacterium Vibrio fischeri have permitted a detailed understanding of those bacterial genes underlying signal exchange and rhythmic activities that result in a persistent, beneficial association, as well as glimpses into the evolution of symbiotic competence. Migrating from the ambient seawater to regions deep inside the light-emitting organ of the squid, V. fischeri experiences, recognizes and adjusts to the changing environmental conditions. Here, we review key advances over the past 15 years that are deepening our understanding of these events.

Indexed as

Host Microbial InteractionsSymbiosisAliivibrio fischeriAnimalsDecapodiformesEvolution, MolecularHawaiiSeawater

Identifiers

PMID34089008
PMCPMC8529645
OpenAlexW3165165483

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.