Evidence map›Paper›PMID 34088849›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency.

Glenn J Markov, Thach Mai, Surag Nair, Anna Shcherbina, Yu Xin Wang, David M Burns, Anshul Kundaje, Helen M Blau

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. A cross-talk between p16High senescence and cellular reprogramming.Clinical science (London, England : 1979) · 2026
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Glenn J MarkovBaxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA 94305.ORCID 0000-0001-5954-1328
Thach MaiBaxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA 94305.
Surag NairDepartment of Computer Science, Stanford University, Stanford, CA 94305.ORCID 0000-0002-6216-2457
Anna ShcherbinaBiomedical Informatics, Stanford University, Stanford, CA 94305.ORCID 0000-0002-5080-5494
Yu Xin WangBaxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA 94305.ORCID 0000-0001-8440-9388
David M BurnsBaxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA 94305.
Anshul KundajeDepartment of Genetics, Stanford University, Stanford, CA 94305.ORCID 0000-0003-3084-2287
Helen M BlauBaxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA 94305; hblau@stanford.edu.
Stanford University · US

Funding

Training in Basic Research on Aging and Age-Related DiseaseT32AG000266 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Lisa M Ellerby · 1998 to 2026
$13.8M
Learning Regulatory Drivers of Chromatin and Expression Dynamics during Nuclear ReprogrammingR01HG009674 · NHGRI · STANFORD UNIVERSITY · PI BLAU, HELEN M, KUNDAJE, ANSHUL · 2017 to 2019
$2.1M
Regulation of Active DNA Demethylation Dynamics to PluripotencyF32GM112425 · NIGMS · STANFORD UNIVERSITY · PI MAI, THACH · 2014 to 2015
$109k
NHGRI NIH HHS R01 HG009674NIA NIH HHS T32 AG000266NIGMS NIH HHS F32 GM112425
6 · The paper itself

Abstract

Somatic cell transcription factors are critical to maintaining cellular identity and constitute a barrier to human somatic cell reprogramming; yet a comprehensive understanding of the mechanism of action is lacking. To gain insight, we examined epigenome remodeling at the onset of human nuclear reprogramming by profiling human fibroblasts after fusion with murine embryonic stem cells (ESCs). By assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) and chromatin immunoprecipitation sequencing we identified enrichment for the activator protein 1 (AP-1) transcription factor c-Jun at regions of early transient accessibility at fibroblast-specific enhancers. Expression of a dominant negative AP-1 mutant (dnAP-1) reduced accessibility and expression of fibroblast genes, overcoming the barrier to reprogramming. Remarkably, efficient reprogramming of human fibroblasts to induced pluripotent stem cells was achieved by transduction with vectors expressing SOX2, KLF4, and inducible dnAP-1, demonstrating that dnAP-1 can substitute for exogenous human OCT4. Mechanistically, we show that the AP-1 component c-Jun has two unexpected temporally distinct functions in human reprogramming: 1) to potentiate fibroblast enhancer accessibility and fibroblast-specific gene expression, and 2) to bind to and repress

Indexed as

Cellular ReprogrammingGene Expression RegulationAnimalsCell LineHumansKruppel-Like Factor 4MiceMouse Embryonic Stem CellsTranscription Factor AP-1KLF4 protein, humanKlf4 protein, mouseKruppel-Like Factor 4Transcription Factor AP-1c-Junheterokaryonreprogramming pluripotencytranscription factor

Identifiers

PMID34088849
PMCPMC8201948
OpenAlexW3165118996

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.