Evidence map›Paper›PMID 34087208›Full record

ArticleBiophysical journal2021

Depletion of HP1α alters the mechanical properties of MCF7 nuclei.

Susav Pradhan, Raoul Solomon, Ankita Gangotra, Gleb E Yakubov, Geoff R Willmott, Catherine P Whitby, Tracy K Hale, Martin A K Williams

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Susav PradhanSchool of Fundamental Sciences, Massey University, Palmerston North, New Zealand; The MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington, New Zealand.
Raoul SolomonSchool of Fundamental Sciences, Massey University, Palmerston North, New Zealand.
Ankita GangotraThe MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington, New Zealand; Department of Physics, The University of Auckland, Auckland, New Zealand.
Gleb E YakubovSchool of Chemical Engineering, The University of Queensland, Brisbane, Australia; School of Biosciences, Faculty of Science, University of Nottingham, Nottingham, United Kingdom.
Geoff R WillmottThe MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington, New Zealand; Department of Physics, The University of Auckland, Auckland, New Zealand; School of Chemical Sciences, The University of Auckland, Auckland, New Zealand.
Catherine P WhitbySchool of Fundamental Sciences, Massey University, Palmerston North, New Zealand; The MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington, New Zealand.
Tracy K HaleSchool of Fundamental Sciences, Massey University, Palmerston North, New Zealand. Electronic address: t.k.hale@massey.ac.nz.
Martin A K WilliamsSchool of Fundamental Sciences, Massey University, Palmerston North, New Zealand; The MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington, New Zealand. Electronic address: m.williams@massey.ac.nz.
Massey University · NZMacDiarmid Institute for Advanced Materials and Nanotechnology · NZUniversity of Auckland · NZUniversity of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Within the nucleus of the eukaryotic cell, DNA is partitioned into domains of highly condensed, transcriptionally silent heterochromatin and less condensed, transcriptionally active euchromatin. Heterochromatin protein 1α (HP1α) is an architectural protein that establishes and maintains heterochromatin, ensuring genome fidelity and nuclear integrity. Although the mechanical effects of changes in the relative amount of euchromatin and heterochromatin brought about by inhibiting chromatin-modifying enzymes have been studied previously, here we measure how the material properties of the nuclei are modified after the knockdown of HP1α. These studies were inspired by the observation that poorly invasive MCF7 breast cancer cells become more invasive after knockdown of HP1α expression and that, indeed, in many solid tumors the loss of HP1α correlates with the onset of tumor cell invasion. Atomic force microscopy (AFM), optical tweezers (OT), and techniques based on micropipette aspiration (MA) were each used to characterize the mechanical properties of nuclei extracted from HP1α knockdown or matched control MCF7 cells. Using AFM or OT to locally indent nuclei, those extracted from MCF7 HP1α knockdown cells were found to have apparent Young's moduli that were significantly lower than nuclei from MCF7 control cells, consistent with previous studies that assert heterochromatin plays a major role in governing the mechanical response in such experiments. In contrast, results from pipette-based techniques in the spirit of MA, in which the whole nuclei were deformed and aspirated into a conical pipette, showed considerably less variation between HP1α knockdown and control, consistent with previous studies reporting that it is predominantly the lamins in the nuclear envelope that determine the mechanical response to large whole-cell deformations. The differences in chromatin organization observed by various microscopy techniques between the MCF7 control and HP1α knockdown nuclei correlate well with the results of our measured mechanical responses and our hypotheses regarding their origin.

Indexed as

Cell NucleusChromosomal Proteins, Non-HistoneChromobox Protein Homolog 5HeterochromatinHumansMCF-7 CellsTranscription FactorsCBX5 protein, humanChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneHeterochromatinTranscription Factors

Identifiers

PMID34087208
PMCPMC8390905
OpenAlexW3164730707

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.