Evidence map›Paper›PMID 34085925›Full record

ArticleeLife2021

Multiplexed proteomics of autophagy-deficient murine macrophages reveals enhanced antimicrobial immunity via the oxidative stress response.

Timurs Maculins, Erik Verschueren, Trent Hinkle, Meena Choi, Patrick Chang, Cecile Chalouni, Shilpa Rao, Youngsu Kwon, Junghyun Lim, Anand Kumar Katakam and 12 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 3 institutions in 3 countries.

Timurs MaculinsDepartment of Cancer Immunology, Genentech, South San Francisco, United States.ORCID 0000-0002-9333-301X
Erik VerschuerenDepartment of Microchemistry, Proteomics and Lipidomics, Genentech, South San Francisco, United States.
Trent HinkleDepartment of Microchemistry, Proteomics and Lipidomics, Genentech, South San Francisco, United States.
Meena ChoiDepartment of Microchemistry, Proteomics and Lipidomics, Genentech, South San Francisco, United States.ORCID 0000-0002-6025-5035
Patrick ChangDepartment of Pathology, Genentech, South San Francisco, United States.
Cecile ChalouniDepartment of Pathology, Genentech, South San Francisco, United States.
Shilpa RaoDepartment of Oncology Bioinformatics, Genentech, South San Francisco, United States.
Youngsu KwonDepartment of Translational Immunology, Genentech, South San Francisco, United States.
Junghyun LimDepartment of Cancer Immunology, Genentech, South San Francisco, United States.
Anand Kumar KatakamDepartment of Pathology, Genentech, South San Francisco, United States.
Ryan C KunzIQ Proteomics LLC, Cambridge, United States.
Brian K EricksonIQ Proteomics LLC, Cambridge, United States.
Ting HuangKhoury College of Computer Sciences, Northeastern University, Boston, United States.ORCID 0000-0003-1041-2167
Tsung-Heng TsaiKhoury College of Computer Sciences, Northeastern University, Boston, United States.ORCID 0000-0001-5211-2985
Olga VitekKhoury College of Computer Sciences, Northeastern University, Boston, United States.
Mike ReicheltDepartment of Pathology, Genentech, South San Francisco, United States.
Yasin SenbabaogluDepartment of Oncology Bioinformatics, Genentech, South San Francisco, United States.
Brent MckenzieDepartment of Translational Immunology, Genentech, South San Francisco, United States.
John R RohdeDepartment of Microbiology and Immunology, Dalhousie University, Halifax, Canada.
Ivan DikicInstitute of Biochemistry II, Goethe University, Frankfurt am Main, Germany.ORCID 0000-0001-8156-9511
Donald S KirkpatrickInterline Therapeutics, South San Francisco, United States.
Aditya MurthyInterline Therapeutics, South San Francisco, United States.ORCID 0000-0002-6130-9568
Northeastern University · USGoethe University Frankfurt · DEDalhousie University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Defective autophagy is strongly associated with chronic inflammation. Loss-of-function of the core autophagy gene

Indexed as

AutophagyImmunity, InnateOxidative StressProteomeProteomicsAnimalsAutophagy-Related ProteinsCells, CulturedDisease Models, AnimalDysentery, BacillaryHost-Pathogen InteractionsInflammation MediatorsMacrophagesMiceMice, Inbred C57BLMice, KnockoutAtg16l1 protein, mouseAutophagy-Related ProteinsInflammation MediatorsProteomeautophagycell biologyimmunologyinflammationmacrophagesmass spectrometrymouseoxidative damageproteomicsshigella flexneri

Identifiers

PMID34085925
PMCPMC8177894
OpenAlexW3165430529

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.