Evidence map›Paper›PMID 34085213›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Real-Time Monitoring of APC /C-Mediated Substrate Degradation Using Xenopus laevis Egg Extracts.

Julia Kamenz, Renping Qiao, Qiong Yang, James E Ferrell

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 3 countries.

Julia KamenzDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, USA. j.l.kamenz@rug.nl.
Renping QiaoResearch Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria.
Qiong YangDepartment of Biophysics, University of Michigan, Ann Arbor, MI, USA.
James E FerrellDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, USA.
Stanford University · USUniversity of Groningen · NLUniversity of Michigan–Ann Arbor · USVienna Biocenter · AT

Funding

Cytoplasmic organization and systems-level function in Xenopus extractsR35GM131792 · NIGMS · STANFORD UNIVERSITY · PI JAMES E. FERRELL · 2019 to 2026
$5.6M
Supplement: Quantitative in vitro and in vivo analyses of oscillatory processes in early zebrafish embryosR35GM119688 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI YANG, QIONG · 2016 to 2020
$1.9M
NIGMS NIH HHS R35 GM119688NIGMS NIH HHS R35 GM131792
6 · The paper itself

Abstract

The anaphase promoting complex/cyclosome (APC/C), a large E3 ubiquitin ligase, is a key regulator of mitotic progression. Upon activation in mitosis, the APC/C targets its two essential substrates, securin and cyclin B, for proteasomal destruction. Cyclin B is the activator of cyclin-dependent kinase 1 (Cdk1), the major mitotic kinase, and both cyclin B and securin are safeguards of sister chromatid cohesion. Conversely, the degradation of securin and cyclin B promotes sister chromatid separation and mitotic exit. The negative feedback loop between Cdk1 and APC/C-Cdk1 activating the APC/C and the APC/C inactivating Cdk1-constitutes the core of the biochemical cell cycle oscillator.Since its discovery three decades ago, the mechanisms of APC /C regulation have been intensively studied, and several in vitro assays exist to measure the activity of the APC /C in different activation states. However, most of these assays require the purification of numerous recombinant enzymes involved in the ubiquitylation process (e.g., ubiquitin, the E1 and E2 ubiquitin ligases, and the APC /C) and/or the use of radioactive isotopes. In this chapter, we describe an easy-to-implement method to continuously measure APC /C activity in Xenopus laevis egg extracts using APC /C substrates fused to fluorescent proteins and a fluorescence plate reader. Because the egg extract provides all important enzymes and proteins for the reaction, this method can be used largely without the need for recombinant protein purification. It can also easily be adapted to test the activity of APC /C mutants or investigate other mechanisms of APC /C regulation.

Indexed as

Anaphase-Promoting Complex-CyclosomeAnimalsCell Cycle ProteinsCyclin BFeedback, PhysiologicalFemaleLuminescent ProteinsMitosisOptical ImagingOvumProtein KinasesProteolysisRecombinant ProteinsSecurinXenopus laevisXenopus ProteinsAnaphase-Promoting Complex-CyclosomeCDK1 protein, XenopusCell Cycle ProteinsCyclin BLuminescent ProteinsProtein KinasesRecombinant ProteinsSecurinXenopus ProteinsAnaphase promoting complex/cyclosome (APC /C)Cell cycleEnzymatic activityFrog egg extractsPlate reader assayXenopus laevis

Identifiers

PMID34085213
PMCPMC8750558
OpenAlexW3164114380

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.