Evidence map›Paper›PMID 34084176›Full record

ReviewFrontiers in immunology2021

Igh Locus Polymorphism May Dictate Topological Chromatin Conformation and V Gene Usage in the Ig Repertoire.

Amy L Kenter, Corey T Watson, Jan-Hendrik Spille

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

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  14. Characterization of immunoglobulinFrontiers in immunology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Amy L KenterDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL, United States.
Corey T WatsonDepartment of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, United States.
Jan-Hendrik SpilleDepartment of Physics, University of Illinois at Chicago, Chicago, IL, United States.
University of Illinois Chicago · USUniversity of Illinois Urbana-Champaign · USUniversity of Louisville · US

Funding

Chromatin infrastructure of the Igh locus and its influence on VH gene usageR01AI121286 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2016 to 2020
$4.2M
Analysis of Mbd4 function during the generation of Ig diversityR21AI133050 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2017 to 2018
$440k
Identification of a CSR specific checkpointR21AI151892 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2020 to 2021
$440k
NIAID NIH HHS R01 AI121286NIAID NIH HHS R21 AI133050NIAID NIH HHS R21 AI151892
6 · The paper itself

Abstract

Vast repertoires of unique antigen receptors are created in developing B and T lymphocytes. The antigen receptor loci contain many variable (V), diversity (D) and joining (J) gene segments that are arrayed across very large genomic expanses and are joined to form variable-region exons of expressed immunoglobulins and T cell receptors. This process creates the potential for an organism to respond to large numbers of different pathogens. Here, we consider the possibility that genetic polymorphisms with alterations in a vast array of regulatory elements in the immunoglobulin heavy chain (IgH) locus lead to changes in locus topology and impact immune-repertoire formation.

Indexed as

Polymorphism, GeneticSomatic Hypermutation, ImmunoglobulinV(D)J RecombinationAnimalsChromatinEnhancer Elements, GeneticGene Rearrangement, B-LymphocyteGene Rearrangement, T-LymphocyteGenetic LociHumansImmunoglobulin Heavy ChainsPromoter Regions, GeneticTranscription, GeneticChromatinImmunoglobulin Heavy ChainsB cellChromatinimmunoglobulinVDJ recombinationVDJ repertoire

Identifiers

PMID34084176
PMCPMC8167033
OpenAlexW3161628871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.